Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0925 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGATAGACAACTCCAATTACAGCAATCAAGACTTGAAGCTGAAAGCATTAATAAGAAGATGGAGCTGTTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGACGCAGCTCACGATTGGGCCGCCACGCACGGCTGCCGGAGGAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.27 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQSRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKDAAHDWAATHGCRRSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8073960 8082574 - CePI673135_05g009250.1 Cec05g0925 202728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0925 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cec05g0925 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0925 197 Pfam K-box region 86 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec05g0925 197 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 Coils Coil 88 108 - -
Cec05g0925 197 Coils Coil 144 171 - -
Cec05g0925 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g0925 197 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec05g0925 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec05g0925 197 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0925 Cec-Chr5:8073960 Cec06g0025 Cec-Chr6:282325 6.60E-45 dispersed
Cec05g0918 Cec-Chr5:7959993 Cec05g0925 Cec-Chr5:8073960 8.00E-31 proximal
Cec01g0537 Cec-Chr1:5559499 Cec05g0925 Cec-Chr5:8073960 6.60E-51 transposed
Cec01g0318 Cec-Chr1:3260637 Cec05g0925 Cec-Chr5:8073960 1.20E-26 wgd
Cec05g0230 Cec-Chr5:1845998 Cec05g0925 Cec-Chr5:8073960 1.90E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29549 PF01486 K-box 1.10E-20 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0925 - - - 0.0