Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0937 ATGGACTCTTTTTCAACTTTTTATGACGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCCGCCATCGCGCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCAGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGGTGCCTCCACCTCAGCATTTTCGTGATGACATGGATATTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.67 MDSFSTFYDDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVNYMDEEAVFGMPGFLEDMAAGMMVPPPQHFRDDMDIYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8166824 8167459 - CePI673135_05g009370.1 Cec05g0937 202740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0937 211 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 MobiDBLite consensus disorder prediction 1 21 - -
Cec05g0937 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cec05g0937 211 MobiDBLite consensus disorder prediction 1 22 - -
Cec05g0937 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 211 IPR045277 GO:0003700(InterPro)
Cec05g0937 211 CDD AP2 54 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cec05g0937 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0937 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0937 Cec-Chr5:8166824 Cec10g1944 Cec-Chr10:34254389 2.60E-31 dispersed
Cec05g0937 Cec-Chr5:8166824 Cec05g0938 Cec-Chr5:8187321 7.10E-29 tandem
Cec01g0567 Cec-Chr1:5921218 Cec05g0937 Cec-Chr5:8166824 4.30E-63 transposed
Cec01g0304 Cec-Chr1:3076825 Cec05g0937 Cec-Chr5:8166824 2.80E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29551 PF00847 AP2 1.30E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0937 - - - 0.0