Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0938 ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGCCGCCACCCCCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGGCCACTCGCATTTGGCTCGGGACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCAGGCCTCCCTTAATTTCCCGGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTCCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGTCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 579 56.65 MSDNNNNSPGRPGRHPLFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALSLKGPQASLNFPDSRNSYRIPLSTSAPDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDVGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8187321 8187899 - CePI673135_05g009380.1 Cec05g0938 202741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0938 192 SMART rav1_2 17 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Cec05g0938 192 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 190 IPR045277 GO:0003700(InterPro)
Cec05g0938 192 MobiDBLite consensus disorder prediction 104 137 - -
Cec05g0938 192 CDD AP2 16 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 Pfam AP2 domain 18 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 Gene3D AP2/ERF domain 17 74 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g0938 192 MobiDBLite consensus disorder prediction 158 192 - -
Cec05g0938 192 MobiDBLite consensus disorder prediction 1 22 - -
Cec05g0938 192 MobiDBLite consensus disorder prediction 169 192 - -
Cec05g0938 192 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677(InterPro)
Cec05g0938 192 MobiDBLite consensus disorder prediction 104 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0304 Cec-Chr1:3076825 Cec05g0938 Cec-Chr5:8187321 1.60E-43 dispersed
Cec05g0938 Cec-Chr5:8187321 Cec10g0379 Cec-Chr10:4559771 2.30E-42 dispersed
Cec05g0937 Cec-Chr5:8166824 Cec05g0938 Cec-Chr5:8187321 7.10E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29552 PF00847 AP2 4.00E-10 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0938 - - - 0.0