Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g0938 | ATGTCTGATAATAATAATAATTCTCCCGGCCGCCCTGGCCGCCACCCCCTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGGCCACTCGCATTTGGCTCGGGACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCAGGCCTCCCTTAATTTCCCGGACTCTCGTAATTCCTATCGCATTCCTCTTTCCACTTCCGCTCCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGTCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA | 579 | 56.65 | MSDNNNNSPGRPGRHPLFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALSLKGPQASLNFPDSRNSYRIPLSTSAPDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDVGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8187321 | 8187899 | - | CePI673135_05g009380.1 | Cec05g0938 | 202741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g0938 | 192 | SMART | rav1_2 | 17 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | FunFam | Ethylene-responsive transcription factor 2 | 16 | 75 | - | - | |
Cec05g0938 | 192 | ProSiteProfiles | AP2/ERF domain profile. | 17 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 14 | 190 | IPR045277 | GO:0003700(InterPro) | |
Cec05g0938 | 192 | MobiDBLite | consensus disorder prediction | 104 | 137 | - | - | |
Cec05g0938 | 192 | CDD | AP2 | 16 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | PRINTS | Ethylene responsive element binding protein signature | 55 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | PRINTS | Ethylene responsive element binding protein signature | 18 | 29 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | Pfam | AP2 domain | 18 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | Gene3D | AP2/ERF domain | 17 | 74 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec05g0938 | 192 | MobiDBLite | consensus disorder prediction | 158 | 192 | - | - | |
Cec05g0938 | 192 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cec05g0938 | 192 | MobiDBLite | consensus disorder prediction | 169 | 192 | - | - | |
Cec05g0938 | 192 | SUPERFAMILY | DNA-binding domain | 18 | 75 | IPR016177 | GO:0003677(InterPro) | |
Cec05g0938 | 192 | MobiDBLite | consensus disorder prediction | 104 | 143 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0304 | Cec-Chr1:3076825 | Cec05g0938 | Cec-Chr5:8187321 | 1.60E-43 | dispersed | |
Cec05g0938 | Cec-Chr5:8187321 | Cec10g0379 | Cec-Chr10:4559771 | 2.30E-42 | dispersed | |
Cec05g0937 | Cec-Chr5:8166824 | Cec05g0938 | Cec-Chr5:8187321 | 7.10E-29 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29552 | PF00847 | AP2 | 4.00E-10 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g0938 | - | - | - | 0.0 |