Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0954 ATGATAGTTTTGAACGCACTTGATCCCTCCTCCATAATACGACAGAGGCCAACCAATCAGAGGTTTGTGGGTTCCACAACGGTCTGTCTGCAAAGATCCCATCGCGAGAATCTGAAAATAGAGATAGAGATAAGAGTGAGATATGAACTGGAAGGAAATGAGGAAAAAAAGGAGTTTTCTTGTCTTGTTCCCTTTGAGTTTGCTAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACCGGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGGTTGTGCCCTTTGCCAATCATCGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGGCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTGTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTTGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCGAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCAACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGTTTCTGCAAGCAGCACGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTCGGTTGCAGGAGGCTCCCTTCGGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCTGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGCGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCTGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGTTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTTGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACGGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2460 44.63 MIVLNALDPSSIIRQRPTNQRFVGSTTVCLQRSHRENLKIEIEIRVRYELEGNEEKKEFSCLVPFEFARKMDGYGEVCLLGDGFDPTGIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVVPFANHRSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPVMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSWDGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRLLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSWPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDVSGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYVCTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8315235 8321492 + CePI673135_05g009540.1 Cec05g0954 202757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0954 819 CDD homeodomain 125 182 IPR001356 GO:0003677(InterPro)
Cec05g0954 819 SMART START_1 332 552 IPR002913 GO:0008289(InterPro)
Cec05g0954 819 MobiDBLite consensus disorder prediction 95 131 - -
Cec05g0954 819 FunFam Homeobox-leucine zipper protein HDG1 111 198 - -
Cec05g0954 819 SUPERFAMILY Bet v1-like 580 813 - -
Cec05g0954 819 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677(InterPro)
Cec05g0954 819 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 817 IPR042160 -
Cec05g0954 819 Gene3D - 111 198 - -
Cec05g0954 819 SMART HOX_1 124 186 IPR001356 GO:0003677(InterPro)
Cec05g0954 819 FunFam Homeobox-leucine zipper protein GLABRA 2 332 551 - -
Cec05g0954 819 Coils Coil 176 208 - -
Cec05g0954 819 Pfam Homeodomain 125 180 IPR001356 GO:0003677(InterPro)
Cec05g0954 819 SUPERFAMILY Bet v1-like 324 552 - -
Cec05g0954 819 SUPERFAMILY Homeodomain-like 109 182 IPR009057 -
Cec05g0954 819 CDD START_ArGLABRA2_like 332 550 - -
Cec05g0954 819 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec05g0954 819 ProSiteProfiles START domain profile. 323 555 IPR002913 GO:0008289(InterPro)
Cec05g0954 819 Pfam START domain 333 551 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0954 Cec-Chr5:8315235 Cec09g1162 Cec-Chr9:11617178 1.80E-149 dispersed
Cec05g0211 Cec-Chr5:1719180 Cec05g0954 Cec-Chr5:8315235 5.80E-211 wgd
Cec05g0954 Cec-Chr5:8315235 Cec06g0005 Cec-Chr6:119486 5.50E-263 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29554 PF01852 START 1.30E-46 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0954 K09338 - csv:101218216 1426.77