Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0963 ATGTACCACCGCTTAAAGTGGAGGAGTATGGACCCGCCCAAGGGCAAGGGAAGCCGAAACCTCTCCACTGGAGAAATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGAATAAGAGGTTGTGCATCGATCTCTCATGTTGGATAGTTCAGCTTCAAAATGTAAGCAAATCCCATTCCCGTTTGAATAATAAGATTTACTTGAAAGGGCTCTTTCACCGCCTTCGAGCTCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGGATCAAACTGTCAACTTATAGACGCCGCTTGAACAATGGAAATGAGGTCGCTCAAAATGATGCAAATCCCCAGCAAATATGCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGATTGGCGCTTGGTATCCCTTGTCTAGATGGGCTTGAGGAAGCTGAAGCACAATGTGCATTGCTAAATTCAGAATTCTTATGTGATGGATGTTTTACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACGGTGTATAGGGATATCTGCCTTGGAGATTCCGGTCATGTAGTTTGTTATGAAATGGATGACATCCAAAGACAATTAGGATTCGGAAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGGAGTGACTACTCGCAGGGCGTTTATGGCATGGGTCGCGATTCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGCTGTCCTCCAAAAAATTGCATCTGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGACTTCCTAATTCTGGGAATGGACAGTATATGCATAAATGCGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCCGTGAGTAGGGTTCTTGTTCAGCACCCTTTTCAACGTATCAAACTTCAGCAGATATGCGCCGAATTTTTCGCATGGCTTCCTGAGAAAACAGATGAATACATTCTCCCAAAGGTAGCAGAAAGAGATCTACGACGATTTGCAAACATTCGATCTAAAACATCAGAACTTGGTTTCAATATTCCACTTCAACAGGTACCAGTTAATTGTCCTGTTTCTGGAATTGTCAAGCACCGAAAAGTCCAAGGCAATGACTGCTATGAGGTTTCTTGGAAAAATATTGATGGACTTGATTCATCTGTTGTGCCAGCAGATCTCTTGCAGAGTGCCTGTCCCGAGATGATTATAGAATTTGAGGAGCAAAGGGCTGAAGGAAGAAAACAAAATAAGCGCAAAACTAAAACAAAGGAGTCGGAGGCTGCTGTGGCTGAAATTGATAAAAGACTTCAAACTTTGTTGCTTGATATTGAATCTGAAAGCAGGGCAGCTCATAATCTCTCCCAGGTTTCAATAGTTTCAGAGACTTCTGGCACTGGTGTTGATGAACTGAACCAAGAGCGATTTCCGGACGTTGAACCAATCATTGTCGATCATGCTCGTAGCTGTAGCAAAGAGAGGATTGAGGTCATTAATCTCTTAAGCCCTTCACCTGCAATGCAAACCCGTAAGGCTTCAAAATTTCAACAGAAAAATAGTCAAAAGATTGATGTAATTGATTTGAGTGATACAGAAACTGATCAGTCACCTGAACATGAGAGAAAGGCAAGAGAGTTGAGATCTTTCTTAGCTACTTTAAAGGGTAAATGA 1770 42.15 MYHRLKWRSMDPPKGKGSRNLSTGEMGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVSKSHSRLNNKIYLKGLFHRLRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQNDANPQQICSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEAEAQCALLNSEFLCDGCFTSDSDAFLFGARTVYRDICLGDSGHVVCYEMDDIQRQLGFGRNSMITLALLLGSDYSQGVYGMGRDSACQIVKAVGDSAVLQKIASEGLSFAKKGKNSKKQGLPNSGNGQYMHKCDQFSEVIDAYLKPKCHSADSEAVSRVLVQHPFQRIKLQQICAEFFAWLPEKTDEYILPKVAERDLRRFANIRSKTSELGFNIPLQQVPVNCPVSGIVKHRKVQGNDCYEVSWKNIDGLDSSVVPADLLQSACPEMIIEFEEQRAEGRKQNKRKTKTKESEAAVAEIDKRLQTLLLDIESESRAAHNLSQVSIVSETSGTGVDELNQERFPDVEPIIVDHARSCSKERIEVINLLSPSPAMQTRKASKFQQKNSQKIDVIDLSDTETDQSPEHERKARELRSFLATLKGK 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8396282 8401517 + CePI673135_05g009630.1 Cec05g0963 202766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0963 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 49 63 IPR006084 -
Cec05g0963 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 96 115 IPR006084 -
Cec05g0963 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 175 195 IPR006084 -
Cec05g0963 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 154 171 IPR006084 -
Cec05g0963 589 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 230 245 IPR006084 -
Cec05g0963 589 ProSiteProfiles Chromo and chromo shadow domain profile. 391 451 IPR000953 -
Cec05g0963 589 MobiDBLite consensus disorder prediction 558 577 - -
Cec05g0963 589 Pfam XPG I-region 158 240 IPR006086 GO:0004518(InterPro)
Cec05g0963 589 Gene3D - 27 224 - -
Cec05g0963 589 Gene3D - 391 458 - -
Cec05g0963 589 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 26 545 IPR006084 GO:0017108(PANTHER)
Cec05g0963 589 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 225 372 IPR036279 -
Cec05g0963 589 SUPERFAMILY PIN domain-like 28 240 IPR029060 -
Cec05g0963 589 CDD CSD 396 443 - -
Cec05g0963 589 SMART xpgn3 26 122 IPR006085 GO:0004518(InterPro)
Cec05g0963 589 MobiDBLite consensus disorder prediction 539 577 - -
Cec05g0963 589 MobiDBLite consensus disorder prediction 539 557 - -
Cec05g0963 589 CDD PIN_GEN1 27 223 - -
Cec05g0963 589 SUPERFAMILY Chromo domain-like 393 444 IPR016197 -
Cec05g0963 589 SMART xpgineu 155 225 IPR006086 GO:0004518(InterPro)
Cec05g0963 589 FunFam Flap endonuclease GEN-like 1 225 283 - -
Cec05g0963 589 Pfam XPG N-terminal domain 26 116 IPR006085 GO:0004518(InterPro)
Cec05g0963 589 Gene3D - 226 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0963 K15338 - - csv:101214962 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0963 Cec-Chr5:8396282 Cec10g1458 Cec-Chr10:28914054 1.10E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35