Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g0964 ATGGGGAAACAGAAACAACAAGTGATTTCTCGATTCTTTGCTCCAAAGCCCAAGTCCCCATCTCTTTCTTCTTCTTCCTCCGCCGCCGCCGCCTTAACTTCGCCGACCCAACCTTTTTCACCTCCTAAGATATCAGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCAATCGCCTCTCAATCAACACCACCCAAATCCTCTAAACGCCCAAAACTCTCTCCTCATACCCAAAACCCTCTGCCTTCCGTTCCCAATGCCTCACTTCATAAAAGATTCCTCCACAAGTTCCTTGAACCCACGGATGACTCTTTCGAACCTTCTAATCAAAACCCCAGAATCTCAACGGTCGCTGATGTCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTATAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTTAAGCAAACCGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGTAGGGGATTATCGGCTTTGTATACTAAATCAACATTGGAGGCAGCCCAGAATTTTGGGGGAGCTGAAGAGGGATGTGGTGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAAAATAGTATGTTGGTGGATAATTTGGACTTTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTTATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTACTGAGTTACTTCTTGGGGATCCCACATCAAAGCCAACAGAGAAGTTATTATTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTATATGAAAACATTGACAAAGATAACTTAGCTGAACATAACAACCCTGAAACGGTGTTGGTTGGACAAAAAAGTGATCGCACAGCAATTAAGGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTAACCATTCGTCACTTGAAGCAGTTTGGTTTAGAAAGGATTGTGTCTTTGGGATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTCGAGGTTTTGAAGAACAATGATGACGGTTCACAAACTGGATCTTTATTACAATGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCTGTTTCCGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCAAAATAACAGAGTGTTGGATGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATTAGAGTTCATTGCAGTTATTCAAGCTATTCTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTCATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGTCTCCAAGCTCCTCAGAAAGCTGATTTTATCTGCTTCTTCCTCCAATTTAATAAACATTGCTGCAAAGCTTTTGTCAATGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCCAACCTAATGATCATCTATGGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCTTATACCGCAAGCACCTTGGAATGCAGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACACATTTGATTGAGTTAGCCTTAGATGTAAAGGTGCCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCGTAAGGTATCACCCACCTGAAATATTGGCTGCGTTAGATGAGCTATCGCTGGCAAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATGGCTTTCTAAGTGGATTCAGCGGATATTATGCAGAGTTCCAAGCTGCTGTTCAAGCATTGGCTTCCATCGATTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTGCATGATGATGAACCTGCTCAGATACTTATATGCTCCGGACGCCATCCGGTTTTGGAAGGTACATTGCAAGGCAATTTTGTCCCAAATGACACAAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGGGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTTGGTTCCTTTGTACCGGCACTCTCTGCCAAACTTCATGTCCTGGATGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACTTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCGCGTTCCTTGGTCATAATTGACGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTTTGCATAATCTTCTCCAGCAGAAGAAATGTTTGGTCCTTTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGCAAAGGAGTTCCCGGCATCTGCGGGGGTATACCATGTTTCATATCTTACTTCACACAAAAATCCAAGCTTGTCGGGCCCAAAATCGACTGAAGAGGATGTGACTTACCTATATAAACTTGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTATCATGTATTGCACGGGCCACAGAGATGGGGGTCTGGTTAGAAGAAATAGTAACAAGAAGAGCACAGCGTAAATCCACAGAACAGCATTCGCAAGAAGCATCAGCCAAGGGGTGGGAATGGGAAAGCTCCCAGTGCTTCCTCGAAGATGTTGATGCGTCAGAAGAAAGAATTGATGATTACGAGAAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTGCTGATGACATGGGAAAAAGGTGCCATCAAATTTACCAAGCGAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA 3342 43.09 MGKQKQQVISRFFAPKPKSPSLSSSSSAAAALTSPTQPFSPPKISATVTFSPSKRLISSAIASQSTPPKSSKRPKLSPHTQNPLPSVPNASLHKRFLHKFLEPTDDSFEPSNQNPRISTVADVKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKSTLEAAQNFGGAEEGCGGESNYLFCVVENSMLVDNLDFRIENGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPTELLLGDPTSKPTEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENIDKDNLAEHNNPETVLVGQKSDRTAIKEIVNMPNLALQALALTIRHLKQFGLERIVSLGSSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSQTGSLLQCMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMVSSKVSQNNRVLDEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPLEFIAVIQAILFAGKQLQQFHIHEEDDNYSSESMIVSKLLRKLILSASSSNLINIAAKLLSMISKEAADQGDFPNLMIIYGDQFPKVARARKEAQSAREKLDSLITLYRKHLGMQKLEFTSVSGTTHLIELALDVKVPSNWVKVNSTKKTVRYHPPEILAALDELSLANEELMVASRDAWDGFLSGFSGYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQILICSGRHPVLEGTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKNPSLSGPKSTEEDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHSQEASAKGWEWESSQCFLEDVDASEERIDDYEKFFLFLKATICSADDMGKRCHQIYQARSMAMDLLGR 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8401873 8409423 - CePI673135_05g009640.1 Cec05g0964 202767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g0964 1113 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 129 1048 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Cec05g0964 1113 SMART mutATP5 827 1027 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 MobiDBLite consensus disorder prediction 59 88 - -
Cec05g0964 1113 SMART DNAend 458 810 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 Gene3D - 440 775 - -
Cec05g0964 1113 PIRSF Msh6 113 1076 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 1026 IPR027417 -
Cec05g0964 1113 Pfam MutS domain III 443 775 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 MobiDBLite consensus disorder prediction 59 89 - -
Cec05g0964 1113 SUPERFAMILY DNA repair protein MutS, domain II 251 377 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 Gene3D - 783 1066 IPR027417 -
Cec05g0964 1113 Pfam MutS family domain IV 653 732 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 ProSitePatterns DNA mismatch repair proteins mutS family signature. 908 924 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 MobiDBLite consensus disorder prediction 17 47 - -
Cec05g0964 1113 Gene3D MutS, connector domain 249 437 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 Gene3D DNA repair protein MutS, domain I 117 243 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 FunFam DNA mismatch repair protein MSH3 783 1058 - -
Cec05g0964 1113 Pfam MutS domain I 126 236 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 FunFam DNA mismatch repair protein Msh3 625 751 - -
Cec05g0964 1113 FunFam DNA mismatch repair protein 249 435 - -
Cec05g0964 1113 Coils Coil 651 671 - -
Cec05g0964 1113 Gene3D - 625 751 - -
Cec05g0964 1113 MobiDBLite consensus disorder prediction 1 47 - -
Cec05g0964 1113 SUPERFAMILY DNA repair protein MutS, domain I 119 234 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cec05g0964 1113 SUPERFAMILY DNA repair protein MutS, domain III 443 781 IPR036187 -
Cec05g0964 1113 FunFam DNA mismatch repair protein 116 246 - -
Cec05g0964 1113 Pfam MutS domain V 830 1025 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g0964 K08736 - - csv:101214720 1895.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0964 Cec-Chr5:8401873 Cec09g0511 Cec-Chr9:4383458 8.50E-81 dispersed
Cec06g1700 Cec-Chr6:30588094 Cec05g0964 Cec-Chr5:8401873 4.80E-53 transposed
Cec10g0470 Cec-Chr10:5631906 Cec05g0964 Cec-Chr5:8401873 3.30E-31 transposed
Cec01g0420 Cec-Chr1:4416330 Cec05g0964 Cec-Chr5:8401873 3.80E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36