Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec05g0975 | ATGGTGAGCCAAAGGCAAAGACTTGCTCGGAAAAAGTACAGAGAAGAACATCCAGAACTGTTCCCGATAGCAGAGCCAACCCCACCAAAAGACCCCGACAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGAAGAATCGAACTCAACCAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGATCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAGGAACTGTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCAGAACCCCTTCAAGATGGGGGAACTAAGTTCGCCAGTTGTTTTATTTGTAATGCAAGCGGACATTTAAGCAAGAATTGTCCGAAGAATACTCATGGGATCTATCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGGCAACCAAGTGTTTGATAGGGCTGGTGTATCTGGTTATAGAACATCTGGATATGTGGAAATGCCGAGACGACAAGTGACGAAGCCCGTCAGCGGTGATGATCTCGAGGATGACTTCATGATCAATGAAGATCATTTGCAGATCAAAGATGCAAAAATGGGAAAGAAAAAGGGTCCTAAAGTTGTGAGGTTCATGGATTGA | 801 | 43.32 | MVSQRQRLARKKYREEHPELFPIAEPTPPKDPDKKKKKKSKFKRKKEESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCPEPLQDGGTKFASCFICNASGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKGNQVFDRAGVSGYRTSGYVEMPRRQVTKPVSGDDLEDDFMINEDHLQIKDAKMGKKKGPKVVRFMD | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8473229 | 8476613 | - | CePI673135_05g009750.1 | Cec05g0975 | 202778 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec05g0975 | 266 | ProSiteProfiles | Zinc finger CCHC-type profile. | 184 | 199 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SUPERFAMILY | Retrovirus zinc finger-like domains | 123 | 174 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Cec05g0975 | 266 | Pfam | Zinc knuckle | 102 | 118 | IPR025836 | - | |
| Cec05g0975 | 266 | Pfam | Zinc knuckle | 183 | 198 | IPR025836 | - | |
| Cec05g0975 | 266 | Gene3D | - | 152 | 209 | - | - | |
| Cec05g0975 | 266 | Pfam | Zinc knuckle | 129 | 145 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | Pfam | Zinc knuckle | 157 | 172 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SMART | c2hcfinal6 | 129 | 145 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SMART | c2hcfinal6 | 183 | 199 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SMART | c2hcfinal6 | 78 | 94 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SMART | c2hcfinal6 | 156 | 172 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SMART | c2hcfinal6 | 103 | 119 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | SUPERFAMILY | Retrovirus zinc finger-like domains | 72 | 121 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | ProSiteProfiles | Zinc finger CCHC-type profile. | 130 | 145 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | PANTHER | OS04G0555800 PROTEIN | 1 | 265 | - | - | |
| Cec05g0975 | 266 | ProSiteProfiles | Zinc finger CCHC-type profile. | 157 | 172 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Cec05g0975 | 266 | FunFam | Zinc finger CCHC-type-containing 9 | 154 | 206 | - | - | |
| Cec05g0975 | 266 | Gene3D | - | 126 | 151 | - | - | |
| Cec05g0975 | 266 | Gene3D | - | 74 | 125 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec05g0975 | - | - | - | - | 0.0 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g676 | . | . | . | . | Bpe03g00111 | . | . | Bma14g02084 | . | . | Cma02g01068 | Cma15g01098 | Car02g00811 | Car15g01009 | . | Cpe05g00651 | . | . | . | . | . | . | . | . | Cla01g00433 | Cam01g0456 | Cec01g0445 | Cco01g0467 | Clacu01g0455 | Cmu01g0434 | Cre09g2078 | . | Cone5ag0867 | . | . | Lsi05g01225 | . | . | . | . | Blo09g00112 | . | . | . | . | . | . | . | Cmo02g01086 | Cmo15g01156 | Cma16g00125 | . | . | Car18g01154 | Cpe09g00090 | Cpe13g00253 | Bhi12g00511 | . | . | . | Hepe06g0702 | . | . | Cla05g00883 | Cam05g0971 | Cec05g0975 | Cco05g0975 | Clacu05g0958 | Cmu05g0915 | Cre05g0999 | Lsi09g00095 | Csa03g01712 | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010880 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 0 | 0 | 1 | 2 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 31 |