Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1025 ATGGAGAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAACTTCTCTTCAATCCTATGAGAGTGAGCTGAGTACAGATGTCGGAAAAGGGTTCCAAGTGGACAAGATTTTGGATTTAATCTTCTCAATTTATATACCCAAATTTGAGGCAGAAAAGTTGGTGGGGCTACTAGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTTCTTTCAACCATGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAATAAATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGCCATGCCGTACCTAAAGAATCCAAAGTTTGATCCCAACTTTCACGTTTATTTTACAACGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGCGAAGTCTTCAATGTAGCTAAGATTAGGAATATAGGAGCAGTACTTGGCATTCAAAATTTGAATATGTCTTTTCCTTTAAACTCTGTTTCTGCAGAACTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAATCTTAAATTAGCACAACTTCAGGCTTTATTGGAGGAAAAGGAGGCTCATCTTTGCCACTTGAGAAGCCTGGTGAACAGTTCTTCAAGTGTGATGCACGAAGAGAATGCTACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGGTTTCAGCTGGCTCTGACAAGTGTACTGCTTCAAATGAAGATTCAAGTTCTTTAGTAACTATTTGCTCGGGAGACCGTGAAGTTGGTGATCCTAGTCATAGTTGTGAAGATGTTCGTCAAATGGTGAATAGCGGAGAAGTCCATGTACAAGAAGACTTCCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGATTCGGCCACTCCAGCATCTAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGACTGGGAGTGTAAATCCGATCGCCTACTTCTAATAGGCACCGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGCGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGATCAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAACATGAGAACTTGGAAGTCAATGACAGTCCTTCCTCTGGGTAAGGATCCACCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCCGCTTGTCTACAAATTACAGGGTGGCCGGCACATGATTCTGCCATTAACTCGATTCTTTTCGGGCCGGATGAAACTAGCATTTTTACTTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCTGAGAGCTCTCTGTCCTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGCGGATTGAAAACTCTTCCACACACGGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCCGACCACTCAGTTCGAGTTACGTCTATTTCTTGA 1974 42.65 MENMQYAEELVREFLVFRGFTTSLQSYESELSTDVGKGFQVDKILDLIFSIYIPKFEAEKLVGLLGFFKQCLASSSDNTLLSTMSKLEVSILRYYMVHAIQSGRTDKVLEFLKINGNDLLQRTKDWTPWFAMPYLKNPKFDPNFHVYFTTEWYEALHVSVRNFFSEVFNVAKIRNIGAVLGIQNLNMSFPLNSVSAELSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHLRSLVNSSSSVMHEENATSSNDAQETCPPPTTQVGETQLARDGVSAGSDKCTASNEDSSSLVTICSGDREVGDPSHSCEDVRQMVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSATPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESSLSLRHEMALDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSVRVTSIS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8956421 8963135 + CePI673135_05g010250.1 Cec05g1025 202828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1025 657 Pfam WD domain, G-beta repeat 622 653 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 Pfam WD domain, G-beta repeat 339 373 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 PANTHER OS05G0299300 PROTEIN 1 656 - -
Cec05g1025 657 Pfam Anaphase-promoting complex subunit 4 WD40 domain 487 541 IPR024977 -
Cec05g1025 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 657 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 SUPERFAMILY WD40 repeat-like 334 653 IPR036322 GO:0005515(InterPro)
Cec05g1025 657 Gene3D - 460 657 IPR015943 GO:0005515(InterPro)
Cec05g1025 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 657 - -
Cec05g1025 657 Gene3D - 194 458 IPR015943 GO:0005515(InterPro)
Cec05g1025 657 SMART WD40_4 479 520 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 SMART WD40_4 617 655 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 SMART WD40_4 335 374 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 SMART WD40_4 521 562 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 SMART WD40_4 380 419 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 Coils Coil 191 232 - -
Cec05g1025 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 383 IPR001680 GO:0005515(InterPro)
Cec05g1025 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 377 - -
Cec05g1025 657 MobiDBLite consensus disorder prediction 245 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1025 K24760 - - csv:101209643 1178.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32