Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1032 TTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTTGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGATTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGCCTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCTGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTCGTAGTGAAGAGGCTGAATCAAGTGACGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCTGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCGCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCAGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCGATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCGCTCGTGCCTGAGATCGCTCATATGTACAAGACTGACAGGAACAAATATGAGACAACCGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA 2064 44.04 FIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGIIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9014177 9021445 + CePI673135_05g010320.1 Cec05g1032 202835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1032 687 FunFam Ubiquitin-conjugating enzyme 28, E2 540 687 - -
Cec05g1032 687 SUPERFAMILY L domain-like 22 196 - -
Cec05g1032 687 Pfam Ubiquitin-conjugating enzyme 544 680 IPR000608 -
Cec05g1032 687 CDD UBCc 544 681 IPR000608 -
Cec05g1032 687 PANTHER OS05G0588300 PROTEIN 12 544 IPR050994 -
Cec05g1032 687 Pfam Protein tyrosine and serine/threonine kinase 315 525 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1032 687 ProSiteProfiles Protein kinase domain profile. 311 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1032 687 FunFam pollen receptor-like kinase 1 280 386 - -
Cec05g1032 687 FunFam Probable inactive receptor kinase RLK902 10 169 - -
Cec05g1032 687 SUPERFAMILY Protein kinase-like (PK-like) 315 538 IPR011009 -
Cec05g1032 687 Gene3D Phosphorylase Kinase; domain 1 276 386 - -
Cec05g1032 687 Gene3D Ribonuclease Inhibitor 123 218 IPR032675 -
Cec05g1032 687 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 613 628 IPR023313 -
Cec05g1032 687 Pfam Leucine rich repeat N-terminal domain 12 48 IPR013210 -
Cec05g1032 687 Gene3D Ribonuclease Inhibitor 12 122 IPR032675 -
Cec05g1032 687 Gene3D Transferase(Phosphotransferase) domain 1 390 537 - -
Cec05g1032 687 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 540 686 IPR000608 -
Cec05g1032 687 SUPERFAMILY UBC-like 542 686 IPR016135 -
Cec05g1032 687 Pfam Leucine Rich Repeat 102 122 IPR001611 GO:0005515(InterPro)
Cec05g1032 687 Pfam Leucine Rich Repeat 150 167 IPR001611 GO:0005515(InterPro)
Cec05g1032 687 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515(InterPro)
Cec05g1032 687 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Cec05g1032 687 SMART ubc_7 543 686 - -
Cec05g1032 687 Gene3D Ubiquitin Conjugating Enzyme 538 687 IPR016135 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0066 Cec-Chr1:528441 Cec05g1032 Cec-Chr5:9014177 3.30E-141 dispersed
Cec02g0437 Cec-Chr2:4120427 Cec05g1032 Cec-Chr5:9014177 8.90E-79 dispersed
Cec02g0572 Cec-Chr2:5529721 Cec05g1032 Cec-Chr5:9014177 7.40E-23 dispersed
Cec04g0611 Cec-Chr4:24642556 Cec05g1032 Cec-Chr5:9014177 2.10E-22 dispersed
Cec04g0755 Cec-Chr4:26883407 Cec05g1032 Cec-Chr5:9014177 6.50E-160 dispersed
Cec05g1032 Cec-Chr5:9014177 Cec11g0278 Cec-Chr11:3025179 2.10E-106 dispersed
Cec05g2686 Cec-Chr5:37432080 Cec05g1032 Cec-Chr5:9014177 2.20E-34 dispersed
Cec07g0955 Cec-Chr7:23457397 Cec05g1032 Cec-Chr5:9014177 1.10E-16 dispersed
Cec06g2014 Cec-Chr6:33305336 Cec05g1032 Cec-Chr5:9014177 2.20E-32 transposed
Cec07g0646 Cec-Chr7:9855923 Cec05g1032 Cec-Chr5:9014177 1.50E-49 transposed
Cec01g0205 Cec-Chr1:1988421 Cec05g1032 Cec-Chr5:9014177 2.60E-223 wgd
Cec01g0064 Cec-Chr1:518535 Cec05g1032 Cec-Chr5:9014177 4.20E-66 wgd
Cec05g1032 Cec-Chr5:9014177 Cec07g1592 Cec-Chr7:31442467 1.90E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72002 PF00069 Pkinase 3.20E-31 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1032 - - - 0.0