Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1048 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACGTATAGGAATAATCAATAGACGGTTCCAAATCAACAATATCTGGAGGAGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACTAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTCGATGGTCAAACTGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCACGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCGAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGCGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTATGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCGGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCGGATACTCGAGAAAACAACTAA 1062 45.01 MVCSYNIRNVIAQAGRIGIINRRFQINNIWRSLPSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVCNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9171551 9175669 - CePI673135_05g010480.1 Cec05g1048 202851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1048 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Cec05g1048 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Cec05g1048 353 MobiDBLite consensus disorder prediction 60 83 - -
Cec05g1048 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Cec05g1048 353 CDD PP2Cc 94 338 IPR001932 -
Cec05g1048 353 Gene3D - 84 343 IPR036457 -
Cec05g1048 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Cec05g1048 353 PANTHER PROTEIN PHOSPHATASE 78 337 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec05g1048 353 MobiDBLite consensus disorder prediction 63 81 - -
Cec05g1048 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Cec05g1048 353 SMART PP2C_4 82 336 IPR001932 -
Cec05g1048 353 SUPERFAMILY PP2C-like 88 339 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1048 Cec-Chr5:9171551 Cec05g1772 Cec-Chr5:29554023 1.10E-93 dispersed
Cec05g1048 Cec-Chr5:9171551 Cec05g1054 Cec-Chr5:9250624 6.50E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1048 K17506 - csv:101203681 688.723