Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1054 ATGTGCGATCCCACTACCATGATTAAAACCAAGAATGCTTGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGATGGTGCACGCGGCGGAGGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTAGTCTCTGAGAAGGAATCGTCTTCGGCGTTGGACTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACTACGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGAAGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTTTGGGATGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCGGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAACCATTGCTCTCCATGA 1038 49.9 MCDPTTMIKTKNACRRRLRVRKLRYKWQRMVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALDCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGRLMERCFERMDEEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPNHCSP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9250624 9252696 - CePI673135_05g010540.1 Cec05g1054 202857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1054 345 SMART PP2C_4 55 335 IPR001932 -
Cec05g1054 345 Pfam Protein phosphatase 2C 72 330 IPR001932 -
Cec05g1054 345 ProSitePatterns PPM-type phosphatase domain signature. 103 111 IPR000222 GO:0043169(InterPro)
Cec05g1054 345 PANTHER PROTEIN PHOSPHATASE 57 336 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec05g1054 345 FunFam Protein phosphatase 2C 50 61 344 - -
Cec05g1054 345 SUPERFAMILY PP2C-like 61 339 IPR036457 -
Cec05g1054 345 ProSiteProfiles PPM-type phosphatase domain profile. 70 337 IPR001932 -
Cec05g1054 345 Gene3D - 65 343 IPR036457 -
Cec05g1054 345 CDD PP2Cc 69 337 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0913 Cec-Chr5:7901160 Cec05g1054 Cec-Chr5:9250624 7.10E-65 dispersed
Cec05g1054 Cec-Chr5:9250624 Cec07g1505 Cec-Chr7:30647043 7.00E-58 dispersed
Cec05g1048 Cec-Chr5:9171551 Cec05g1054 Cec-Chr5:9250624 6.50E-35 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1054 K14497 - csv:101214188 572.392