Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1064 ATGAGCTACGGCAGGCTCCACAGAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCACCCCCTTTCATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCGTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACTCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACACTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTTCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGTTCCGCTTACGATGCTTGTCTTGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCATCCTCCGCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGAGGATAATTCCGGTAACTTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAGAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCAAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTCATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTGGCATCGTCTAACGGCACAAACCCGACGTATCTTGGCCGTCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCAACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGGGGGGCGGTGGGCCAGAGGGTGACGTGGCATGGGTATCGAGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTACGGCTCCTCATGGTTGCCGTCCACCGGAGTGGCATTCCTCGGAGGGCTAAACGTGTAA 1815 53.17 MSYGRLHRTDPGGTSSSAAAFQLPDHPLSFTPPNPRRTRLFVISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSAGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGHDEDNSGNFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWHGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9392488 9394969 + CePI673135_05g010640.1 Cec05g1064 202867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1064 604 Gene3D - 284 602 IPR012334 -
Cec05g1064 604 CDD PMEI-like_3 87 237 - -
Cec05g1064 604 FunFam Pectinesterase 284 602 - -
Cec05g1064 604 SUPERFAMILY Pectin lyase-like 286 600 IPR011050 -
Cec05g1064 604 NCBIfam pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857(InterPro)
Cec05g1064 604 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857(InterPro)
Cec05g1064 604 PANTHER PECTINESTERASE 42 593 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec05g1064 604 FunFam Pectinesterase 80 239 - -
Cec05g1064 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Cec05g1064 604 SMART PMEI_2 79 235 IPR006501 GO:0004857(InterPro)
Cec05g1064 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec05g1064 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Cec05g1064 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1064 Cec-Chr5:9392488 Cec09g0545 Cec-Chr9:4700357 6.30E-131 dispersed
Cec01g0041 Cec-Chr1:335094 Cec05g1064 Cec-Chr5:9392488 3.70E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1064 - - - 0.0