Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1068 GTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCGAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGCGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCGGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCGCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATGTAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCGGCATTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTTATTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2220 44.14 VLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENVIDAVIVDEESIGLDRPPGSGAKILYGKGALDRYLSGQKATSQDSEREPEPEGETDLPSVVASGIGVVFISADFLLLLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9447597 9459845 - CePI673135_05g010680.1 Cec05g1068 202871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1068 739 ProSiteProfiles Zinc finger RING-type profile. 478 514 IPR001841 -
Cec05g1068 739 MobiDBLite consensus disorder prediction 366 388 - -
Cec05g1068 739 FunFam E3 ubiquitin-protein ligase SINAT5-like 587 719 - -
Cec05g1068 739 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 478 513 IPR049548 -
Cec05g1068 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 586 IPR013083 -
Cec05g1068 739 Pfam C-terminal, D2-small domain, of ClpB protein 252 321 IPR019489 -
Cec05g1068 739 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 1 250 - -
Cec05g1068 739 CDD RING-HC_SIAHs 476 514 - -
Cec05g1068 739 SMART AAA_5 41 203 IPR003593 GO:0016887(InterPro)
Cec05g1068 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 530 IPR013083 -
Cec05g1068 739 SUPERFAMILY RING/U-box 465 517 - -
Cec05g1068 739 Pfam Sina, zinc finger 527 602 - -
Cec05g1068 739 MobiDBLite consensus disorder prediction 436 459 - -
Cec05g1068 739 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 587 719 IPR008974 GO:0005515(InterPro)
Cec05g1068 739 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 251 353 - -
Cec05g1068 739 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 1 369 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cec05g1068 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 337 IPR027417 -
Cec05g1068 739 FunFam E3 ubiquitin-protein ligase SINAT3 530 586 - -
Cec05g1068 739 Pfam Sina, TRAF-like domain 622 719 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cec05g1068 739 Gene3D - 1 250 IPR027417 -
Cec05g1068 739 Pfam AAA domain (Cdc48 subfamily) 41 245 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec05g1068 739 CDD RecA-like_ClpX 1 249 - -
Cec05g1068 739 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 1 338 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cec05g1068 739 SUPERFAMILY TRAF domain-like 531 723 - -
Cec05g1068 739 Gene3D - 251 349 - -
Cec05g1068 739 CDD Sina 592 720 - -
Cec05g1068 739 FunFam E3 ubiquitin-protein ligase SINAT3 419 529 - -
Cec05g1068 739 ProSiteProfiles Zinc finger SIAH-type profile. 531 591 IPR013010 GO:0008270(InterPro)
Cec05g1068 739 SMART ClpB_D2_small_2 252 344 IPR019489 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0184 Cec-Chr4:7210046 Cec05g1068 Cec-Chr5:9447597 2.90E-132 dispersed
Cec05g1068 Cec-Chr5:9447597 Cec08g0045 Cec-Chr8:833579 1.30E-165 dispersed
Cec05g1067 Cec-Chr5:9442992 Cec05g1068 Cec-Chr5:9447597 1.40E-193 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1068 K03544 - csv:101215939 737.643