Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g1068 | GTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCGAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGCGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCGGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCGCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATGTAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCGGCATTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTTATTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA | 2220 | 44.14 | VLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENVIDAVIVDEESIGLDRPPGSGAKILYGKGALDRYLSGQKATSQDSEREPEPEGETDLPSVVASGIGVVFISADFLLLLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 739 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9447597 | 9459845 | - | CePI673135_05g010680.1 | Cec05g1068 | 202871 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g1068 | 739 | ProSiteProfiles | Zinc finger RING-type profile. | 478 | 514 | IPR001841 | - | |
Cec05g1068 | 739 | MobiDBLite | consensus disorder prediction | 366 | 388 | - | - | |
Cec05g1068 | 739 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 587 | 719 | - | - | |
Cec05g1068 | 739 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 478 | 513 | IPR049548 | - | |
Cec05g1068 | 739 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 531 | 586 | IPR013083 | - | |
Cec05g1068 | 739 | Pfam | C-terminal, D2-small domain, of ClpB protein | 252 | 321 | IPR019489 | - | |
Cec05g1068 | 739 | FunFam | CLP protease regulatory subunit CLPX3 mitochondrial | 1 | 250 | - | - | |
Cec05g1068 | 739 | CDD | RING-HC_SIAHs | 476 | 514 | - | - | |
Cec05g1068 | 739 | SMART | AAA_5 | 41 | 203 | IPR003593 | GO:0016887(InterPro) | |
Cec05g1068 | 739 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 440 | 530 | IPR013083 | - | |
Cec05g1068 | 739 | SUPERFAMILY | RING/U-box | 465 | 517 | - | - | |
Cec05g1068 | 739 | Pfam | Sina, zinc finger | 527 | 602 | - | - | |
Cec05g1068 | 739 | MobiDBLite | consensus disorder prediction | 436 | 459 | - | - | |
Cec05g1068 | 739 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 587 | 719 | IPR008974 | GO:0005515(InterPro) | |
Cec05g1068 | 739 | FunFam | ATP-dependent Clp protease ATP-binding subunit ClpX | 251 | 353 | - | - | |
Cec05g1068 | 739 | PANTHER | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | 1 | 369 | IPR050052 | GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER) | |
Cec05g1068 | 739 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 41 | 337 | IPR027417 | - | |
Cec05g1068 | 739 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 530 | 586 | - | - | |
Cec05g1068 | 739 | Pfam | Sina, TRAF-like domain | 622 | 719 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cec05g1068 | 739 | Gene3D | - | 1 | 250 | IPR027417 | - | |
Cec05g1068 | 739 | Pfam | AAA domain (Cdc48 subfamily) | 41 | 245 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cec05g1068 | 739 | CDD | RecA-like_ClpX | 1 | 249 | - | - | |
Cec05g1068 | 739 | NCBIfam | ATP-dependent protease ATP-binding subunit ClpX | 1 | 338 | IPR004487 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro) | |
Cec05g1068 | 739 | SUPERFAMILY | TRAF domain-like | 531 | 723 | - | - | |
Cec05g1068 | 739 | Gene3D | - | 251 | 349 | - | - | |
Cec05g1068 | 739 | CDD | Sina | 592 | 720 | - | - | |
Cec05g1068 | 739 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 419 | 529 | - | - | |
Cec05g1068 | 739 | ProSiteProfiles | Zinc finger SIAH-type profile. | 531 | 591 | IPR013010 | GO:0008270(InterPro) | |
Cec05g1068 | 739 | SMART | ClpB_D2_small_2 | 252 | 344 | IPR019489 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g0184 | Cec-Chr4:7210046 | Cec05g1068 | Cec-Chr5:9447597 | 2.90E-132 | dispersed | |
Cec05g1068 | Cec-Chr5:9447597 | Cec08g0045 | Cec-Chr8:833579 | 1.30E-165 | dispersed | |
Cec05g1067 | Cec-Chr5:9442992 | Cec05g1068 | Cec-Chr5:9447597 | 1.40E-193 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g1068 | K03544 | - | csv:101215939 | 737.643 |