Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1079 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACGAAGCTCCACCATACCTCCGCCTCCAAACCCACCAAAACAACTAAGCTCACTCTCACAAGAAAAACCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCCATTCATCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTCGCAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATGAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATACGATTCAAGACGAAGAAAATCGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATGTTTGTTCGGAATGAACTTCAACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATTTTTGAGCTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTTGGTATTTGGTGGGCATCCTCTAGTTCCTCTCTTTAA 1164 44.5 MALLSPRLHRFRLTKLHHTSASKPTKTTKLTLTRKTRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGHSSVKFLREELYKDCVAALQGGLLLNGGDFEVIKSALEKAFDDTDERLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVMFVRNELQQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFATIGLVSFGIWWASSSSSL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9534241 9537804 + CePI673135_05g010790.1 Cec05g1079 202882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1079 387 SUPERFAMILY PP2C-like 54 346 IPR036457 -
Cec05g1079 387 CDD PP2Cc 56 345 IPR001932 -
Cec05g1079 387 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169(InterPro)
Cec05g1079 387 Gene3D - 56 351 IPR036457 -
Cec05g1079 387 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Cec05g1079 387 SMART PP2C_4 47 343 IPR001932 -
Cec05g1079 387 PANTHER PROTEIN PHOSPHATASE 2C 55 344 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cec05g1079 387 FunFam Protein phosphatase 2C 57 56 352 - -
Cec05g1079 387 Pfam Protein phosphatase 2C 59 338 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1079 Cec-Chr5:9534241 Cec08g0666 Cec-Chr8:18363502 2.20E-28 dispersed
Cec05g1079 Cec-Chr5:9534241 Cec02g0415 Cec-Chr2:3930559 1.40E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1079 K04457 - csv:101218076 674.855