Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1163 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGCAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGCTATCATTAGGGCTCCATACAAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGGAAGATTCAATAATGTCCAACTTCAACTCAATCCAAAACAAGCCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCCGCCACTATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTGATCCCCACATCTTCAACCTCAAACTTCTCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACCAGCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTTGCGGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACGACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCGAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGACGGCAGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1473 41.21 MEIDLSLKIDHHKEEIFKQQKDLQQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVQQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKEDSIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFSQPSNWINTNPTSFYHTNFPLHGRSLRPADDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGRNKKWVVESLSSNGN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10549420 10554326 + CePI673135_05g011630.1 Cec05g1163 202966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1163 490 Gene3D WRKY domain 215 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1163 490 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1163 490 Coils Coil 161 188 - -
Cec05g1163 490 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1163 490 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1163 490 MobiDBLite consensus disorder prediction 441 490 - -
Cec05g1163 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 445 IPR044810 GO:0003700(InterPro)
Cec05g1163 490 MobiDBLite consensus disorder prediction 441 463 - -
Cec05g1163 490 SMART WRKY_cls 230 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1163 490 MobiDBLite consensus disorder prediction 116 155 - -
Cec05g1163 490 Coils Coil 51 85 - -
Cec05g1163 490 Coils Coil 9 29 - -
Cec05g1163 490 FunFam probable WRKY transcription factor 31 215 292 - -
Cec05g1163 490 MobiDBLite consensus disorder prediction 116 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1536 Cec-Chr1:29948564 Cec05g1163 Cec-Chr5:10549420 3.90E-40 dispersed
Cec04g1884 Cec-Chr4:37382114 Cec05g1163 Cec-Chr5:10549420 3.40E-39 dispersed
Cec05g1163 Cec-Chr5:10549420 Cec06g1830 Cec-Chr6:31720774 1.10E-40 dispersed
Cec05g1163 Cec-Chr5:10549420 Cec02g0213 Cec-Chr2:2062376 4.90E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29568 PF03106 WRKY 2.00E-24 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1163 - - - 0.0