Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1168 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTGGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACCGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAAAACTTTCAGTTAATTGCAGCAGTACAGCCAGCCGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCCTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.24 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10603970 10606228 + CePI673135_05g011680.1 Cec05g1168 202971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1168 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cec05g1168 428 PANTHER TUBBY-RELATED 44 427 - -
Cec05g1168 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cec05g1168 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cec05g1168 428 CDD F-box_AtTLP-like 54 98 - -
Cec05g1168 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cec05g1168 428 Pfam Tub family 115 423 IPR000007 -
Cec05g1168 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cec05g1168 428 Gene3D - 49 101 - -
Cec05g1168 428 FunFam Tubby-like F-box protein 111 428 - -
Cec05g1168 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cec05g1168 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1168 K19600 - - csv:101216314 867.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1658 Cec-Chr4:35803965 Cec05g1168 Cec-Chr5:10603970 3.80E-119 dispersed
Cec05g1168 Cec-Chr5:10603970 Cec08g0347 Cec-Chr8:8778268 5.90E-192 dispersed
Cec05g1168 Cec-Chr5:10603970 Cec05g2076 Cec-Chr5:32637920 2.60E-118 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0347 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 2.3e-178 622.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT1G76900 69.4 3.7e-168 588.2
Cec05g0683 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 4.6e-110 395.2
Cec05g1168 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cec08g0729 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 2.7e-94 342.0
Cec08g0347 . 173 431 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cec05g0683 . 154 387 TUB Transcription Factor Family AT1G25280 53.2 5.2e-69 258.1
Cec05g2076 . 289 516 TUB Transcription Factor Family AT1G25280 53.4 5.4e-66 248.1
Cec04g1658 . 176 413 TUB Transcription Factor Family AT1G25280 51.7 5.0e-64 241.5
Cec06g0545 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cec05g0683 . 98 387 TUB Transcription Factor Family AT5G18680 61.7 1.4e-94 343.2
Cec06g0545 . 98 362 TUB Transcription Factor Family AT5G18680 61.4 2.8e-87 318.9
Cec08g0729 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 3.7e-84 308.5
Cec08g0347 . 112 431 TUB Transcription Factor Family AT5G18680 52.5 1.1e-83 307.0
Cec05g1168 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cec05g2076 . 225 516 TUB Transcription Factor Family AT5G18680 52.2 6.8e-78 287.7
Cec07g1124 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 9.3e-67 250.8
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.4e-139 493.0
Cec05g2076 . 111 516 TUB Transcription Factor Family AT2G18280 59.0 9.9e-125 443.7
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.7e-119 424.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G18280 51.7 8.4e-116 414.1
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 7.1e-115 411.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 3.9e-113 405.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 4.9e-100 361.7
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 1.4e-158 556.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G47900 66.5 3.0e-145 511.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G47900 55.1 3.9e-132 468.4
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 9.5e-131 463.8
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 6.2e-130 461.1
Cec05g2076 . 120 516 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.2e-114 410.2
Cec07g1124 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 3.9e-100 362.1
Cec09g0343 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 6.5e-73 271.2
Cec08g0347 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cec05g1168 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 8.5e-147 516.9
Cec08g0729 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 1.4e-141 499.6
Cec05g0683 . 49 387 TUB Transcription Factor Family AT1G43640 52.6 3.4e-103 372.1
Cec05g2076 . 178 516 TUB Transcription Factor Family AT1G43640 50.1 1.0e-99 360.5
Cec06g0545 . 49 362 TUB Transcription Factor Family AT1G43640 51.0 1.1e-93 340.5
Cec05g2076 . 144 516 TUB Transcription Factor Family AT1G47270 63.9 8.8e-134 473.8
Cec04g1658 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 7.7e-122 434.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cec08g0729 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.5e-112 401.4
Cec08g0347 . 30 431 TUB Transcription Factor Family AT1G47270 51.3 7.2e-112 401.0
Cec07g1124 . 50 383 TUB Transcription Factor Family AT1G53320 78.0 3.3e-154 541.6
Cec05g0683 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 7.8e-95 344.0
Cec06g0545 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 3.4e-82 302.0
Cec05g1168 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cec08g0729 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cec05g2076 . 229 516 TUB Transcription Factor Family AT3G06380 52.9 6.0e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29569 PF01167 Tub 6.90E-117 CL0395 Cec TF