Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1168 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTGGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACCGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAAAACTTTCAGTTAATTGCAGCAGTACAGCCAGCCGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCCTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.24 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAVQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10603970 10606228 + CePI673135_05g011680.1 Cec05g1168 202971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1168 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cec05g1168 428 PANTHER TUBBY-RELATED 44 427 - -
Cec05g1168 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cec05g1168 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cec05g1168 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cec05g1168 428 CDD F-box_AtTLP-like 54 98 - -
Cec05g1168 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cec05g1168 428 Pfam Tub family 115 423 IPR000007 -
Cec05g1168 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cec05g1168 428 Gene3D - 49 101 - -
Cec05g1168 428 FunFam Tubby-like F-box protein 111 428 - -
Cec05g1168 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cec05g1168 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1658 Cec-Chr4:35803965 Cec05g1168 Cec-Chr5:10603970 3.80E-119 dispersed
Cec05g1168 Cec-Chr5:10603970 Cec08g0347 Cec-Chr8:8778268 5.90E-192 dispersed
Cec05g1168 Cec-Chr5:10603970 Cec05g2076 Cec-Chr5:32637920 2.60E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29569 PF01167 Tub 6.90E-117 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1168 K19600 - csv:101216314 867.455