Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1187 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGTCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGGGTTAAGGCTTTATTTGCTCTTTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGATCGATTTCCTGATTTGGAGAAGTACGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAGGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGACATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAAAGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1278 50.16 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIVGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSTSEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10861431 10862708 + CePI673135_05g011870.1 Cec05g1187 202990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1187 425 CDD RING-Ubox_PUB 19 71 IPR045210 -
Cec05g1187 425 Gene3D - 96 298 IPR011989 -
Cec05g1187 425 FunFam RING-type E3 ubiquitin transferase 12 94 - -
Cec05g1187 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cec05g1187 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1187 425 PANTHER WDSAM1 PROTEIN 15 408 IPR045185 GO:0061630(InterPro)
Cec05g1187 425 SMART Ubox_2 21 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1187 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Cec05g1187 425 Pfam U-box domain 18 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1187 425 SUPERFAMILY RING/U-box 15 93 - -
Cec05g1187 425 Gene3D - 300 401 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0048 Cec-Chr2:481653 Cec05g1187 Cec-Chr5:10861431 8.60E-44 dispersed
Cec05g1187 Cec-Chr5:10861431 Cec05g1298 Cec-Chr5:12990005 5.20E-55 dispersed
Cec05g1187 Cec-Chr5:10861431 Cec10g1844 Cec-Chr10:33283467 2.30E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1187 - - - 0.0