Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1192 ATGATACCCGAGCGATCGGCAGCGAGACTTAGCGACGACGGCCGGACAAAACCCACACGAGGTCTATTAGCAGCGGCGACGGCTACTGAAGAGGGGGCGGTGGCGATGGCTGAAGGGAGCAACGTGCAAATGGCGACTACTGGCAAAGGTGAGGCTGCCGACGTAGACCGTCACTGCCAACTGAAAAAAGTTACCGTTACCGGTTACCTACGGATTCCCGACTTGACCTCGTCAGATGGGCCCACAGTGCATTGCGATGGACGGTTGAGATTTCGTAGTGCAGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTGTCCCCGTCTCTTCCTCCGTCGCTCTCTACGTCAAACGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACTGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGGTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTCACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTTAAAAATCTTTCTGAGACAACTACCGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATACCCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGGATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGGCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGACGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCACTGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTTGTGTCATGA 2364 48.18 MIPERSAARLSDDGRTKPTRGLLAAATATEEGAVAMAEGSNVQMATTGKGEAADVDRHCQLKKVTVTGYLRIPDLTSSDGPTVHCDGRLRFRSAVSSALQTLAFFCPRLFLRRSLRQTPPRFPAADHFSTRIFPIIYPVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQAVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGTAADQLASLSLTENLVS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10914748 10930448 - CePI673135_05g011920.1 Cec05g1192 202995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1192 787 Gene3D - 327 427 IPR012677 -
Cec05g1192 787 CDD RRM2_I_PABPs 249 325 IPR045305 -
Cec05g1192 787 SUPERFAMILY RNA-binding domain, RBD 163 332 IPR035979 GO:0003676(InterPro)
Cec05g1192 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 522 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 Gene3D - 428 530 IPR012677 -
Cec05g1192 787 CDD RRM1_I_PABPs 164 243 IPR034364 -
Cec05g1192 787 FunFam Polyadenylate-binding protein 682 765 - -
Cec05g1192 787 CDD RRM3_I_PABPs 341 420 - -
Cec05g1192 787 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 164 759 IPR006515 GO:0003723(InterPro)
Cec05g1192 787 FunFam Polyadenylate-binding protein 149 251 - -
Cec05g1192 787 Gene3D - 682 763 - -
Cec05g1192 787 FunFam Polyadenylate-binding protein 332 427 - -
Cec05g1192 787 FunFam Polyadenylate-binding protein 428 533 - -
Cec05g1192 787 SUPERFAMILY PABC (PABP) domain 629 778 IPR036053 GO:0003723(InterPro)
Cec05g1192 787 SMART rrm1_1 252 324 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 SMART rrm1_1 164 237 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 SMART rrm1_1 343 415 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 SMART rrm1_1 446 518 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 Gene3D - 252 324 IPR012677 -
Cec05g1192 787 Gene3D - 153 251 IPR012677 -
Cec05g1192 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 241 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 419 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 PANTHER RNA BINDING PROTEIN 158 344 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cec05g1192 787 SMART rrm2_1 446 518 IPR003954 GO:0003676(InterPro)
Cec05g1192 787 SMART rrm2_1 164 237 IPR003954 GO:0003676(InterPro)
Cec05g1192 787 SMART rrm2_1 343 415 IPR003954 GO:0003676(InterPro)
Cec05g1192 787 SMART rrm2_1 252 324 IPR003954 GO:0003676(InterPro)
Cec05g1192 787 Pfam Poly-adenylate binding protein, unique domain 693 758 IPR002004 GO:0003723(InterPro)
Cec05g1192 787 SUPERFAMILY RNA-binding domain, RBD 342 526 IPR035979 GO:0003676(InterPro)
Cec05g1192 787 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 686 763 IPR002004 GO:0003723(InterPro)
Cec05g1192 787 SMART poly_2 698 761 IPR002004 GO:0003723(InterPro)
Cec05g1192 787 FunFam Polyadenylate-binding protein 252 325 - -
Cec05g1192 787 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 323 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 CDD RRM4_I_PABPs 444 522 - -
Cec05g1192 787 Pfam RNA recognition motif 253 321 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 Pfam RNA recognition motif 344 412 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 Pfam RNA recognition motif 447 515 IPR000504 GO:0003723(InterPro)
Cec05g1192 787 Pfam RNA recognition motif 165 235 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0851 Cec-Chr5:7219248 Cec05g1192 Cec-Chr5:10914748 4.40E-29 dispersed
Cec05g1192 Cec-Chr5:10914748 Cec10g1975 Cec-Chr10:34522892 1.50E-127 dispersed
Cec04g0234 Cec-Chr4:8981374 Cec05g1192 Cec-Chr5:10914748 4.30E-07 transposed
Cec05g1969 Cec-Chr5:31737998 Cec05g1192 Cec-Chr5:10914748 4.40E-07 transposed
Cec07g1854 Cec-Chr7:34157817 Cec05g1192 Cec-Chr5:10914748 7.10E-06 transposed
Cec08g0749 Cec-Chr8:19232701 Cec05g1192 Cec-Chr5:10914748 8.20E-193 transposed
Cec08g1130 Cec-Chr8:23236870 Cec05g1192 Cec-Chr5:10914748 2.90E-08 transposed
Cec09g1669 Cec-Chr9:30723677 Cec05g1192 Cec-Chr5:10914748 3.60E-08 transposed
Cec02g0641 Cec-Chr2:6498534 Cec05g1192 Cec-Chr5:10914748 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1192 K13126 - csv:101219802 1194.87