Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1197 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCACTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTACTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTGTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAGTGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCACGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGGGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAACCCTTCTTGA 1131 44.12 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISATRSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLELFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYNLVVEHSKAYSSGFYHPINSHKRKHEQHAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGNPS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10987306 10988736 + CePI673135_05g011970.1 Cec05g1197 203000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1197 376 Gene3D - 66 285 - -
Cec05g1197 376 FunFam D3-type cyclin 88 195 - -
Cec05g1197 376 SMART Cyclin_C_2 197 332 IPR004367 -
Cec05g1197 376 SUPERFAMILY Cyclin-like 198 259 IPR036915 -
Cec05g1197 376 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Cec05g1197 376 PANTHER CYCLINS 60 289 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec05g1197 376 SMART cyclin_7 201 289 IPR013763 -
Cec05g1197 376 SMART cyclin_7 100 188 IPR013763 -
Cec05g1197 376 Pfam Cyclin, C-terminal domain 197 312 IPR004367 -
Cec05g1197 376 Coils Coil 25 45 - -
Cec05g1197 376 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Cec05g1197 376 ProSitePatterns Cyclins signature. 95 126 IPR048258 -
Cec05g1197 376 Gene3D - 77 195 - -
Cec05g1197 376 Pfam Cyclin, N-terminal domain 68 194 IPR006671 -
Cec05g1197 376 FunFam CYCLIN D32 196 285 - -
Cec05g1197 376 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1197 Cec-Chr5:10987306 Cec08g1670 Cec-Chr8:28028145 1.00E-78 dispersed
Cec04g1445 Cec-Chr4:34058806 Cec05g1197 Cec-Chr5:10987306 3.90E-29 transposed
Cec02g0664 Cec-Chr2:6803829 Cec05g1197 Cec-Chr5:10987306 5.20E-67 wgd
Cec04g1399 Cec-Chr4:33623813 Cec05g1197 Cec-Chr5:10987306 2.40E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1197 K14505 - csv:101221213 643.269