Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1298 ATGATCTTTTCATGGAGGAAAAACAAATTTGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCGGGGGTCGATTCGGGTTCGGAAATTGCGATTCCTTCGCATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGTATCGAGAAGTGGATTGAGGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGATGAATTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTTACCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATCTCGGTCGCGACTCAAAGAAGCGACTCGAAGAGGTGCAGTGAATTAGTTGGTAAGATCAGGAATTGGGCAAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGCTTGTGTGTTCCCAGTCGCCATTGAAGGCTTATCCAAGCTCGGATCTGCTGATTCTTTGAGAAGTTTGGTTTCCTTCTTAATTGGCAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCAGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAAGCATCTCTTTCAGCCATTTTTTACGTGATTTTACCATCAGAAATCGGTGAGAAAATGGCATTGAAATTTGTGGAACTTGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAATCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACGAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTATCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGTGAAAATGAGGTGAGGGTGGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACCGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGAATGCATTGATTCATCCATGCATTTTAAGTACTTGAAGAAATCATTTTGA 1329 42.21 MIFSWRKNKFGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMNFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVTPYEVKEICSRISVATQRSDSKRCSELVGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLACVFPVAIEGLSKLGSADSLRSLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKASLSAIFYVILPSEIGEKMALKFVELGLVSQLLEFLVDAEKNLCEKALGILDGICDYKQGREKLYENALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLECIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12990005 12991333 + CePI673135_05g012980.1 Cec05g1298 203101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1298 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1298 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Cec05g1298 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1298 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Cec05g1298 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec05g1298 442 SUPERFAMILY RING/U-box 25 107 - -
Cec05g1298 442 Gene3D - 121 417 IPR011989 -
Cec05g1298 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Cec05g1298 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Cec05g1298 442 SUPERFAMILY ARM repeat 185 401 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1187 Cec-Chr5:10861431 Cec05g1298 Cec-Chr5:12990005 5.20E-55 dispersed
Cec05g1298 Cec-Chr5:12990005 Cec07g0613 Cec-Chr7:8245350 3.20E-124 dispersed
Cec05g1298 Cec-Chr5:12990005 Cec10g1844 Cec-Chr10:33283467 3.80E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1298 - - - 0.0