Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1351 ATGGTTCAACCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGAAGACGACGATGGGGATCTTGATTTTCTTCTGCCGCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTCGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACCACTCGTACACGCAAGCTGGCCCATGCTCGCCTTAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTTGGCAGTCGGCTCACTATGGTCTCCACCGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGAGACCCGCTAGCTCAACTTGGTAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCTGAAGGATTGGATAAGCCTGTTGCACCAGAGGCTACAACTGTTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGCAGAAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGGTTTGGTTTTGTAAACTTTGTGAATCGCGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA 867 49.6 MVQPTNPSKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGLDKPVAPEATTVAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14575973 14577647 + CePI673135_05g013510.1 Cec05g1351 203154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1351 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cec05g1351 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Cec05g1351 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Cec05g1351 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Cec05g1351 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Cec05g1351 288 CDD eIF3G 37 156 IPR024675 -
Cec05g1351 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cec05g1351 288 Gene3D - 183 288 IPR012677 -
Cec05g1351 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Cec05g1351 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
Cec05g1351 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Cec05g1351 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1805 Cec-Chr1:32474380 Cec05g1351 Cec-Chr5:14575973 7.10E-157 dispersed
Cec05g1351 Cec-Chr5:14575973 Cec07g1566 Cec-Chr7:31159395 5.00E-09 dispersed
Cec05g1351 Cec-Chr5:14575973 Cec09g0114 Cec-Chr9:981504 2.60E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1351 K03248 - csv:101207022 557.755