Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1432 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGACGACTCCTCTTCTTGGTCCAGAACCAACCACCACAACGACGACGCCATCGCCATTTCCGCCGCCGGTTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACAACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCCGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCAGCTTGCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTCGTTTGCAGCAATAGTTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCCCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTCTCCGATAACCCTCCTGCATTCGGAGCTGGATTTAATCCGGCGGCTGCTTTCGAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAATGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTAGAGGGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAACCCAATGAGTATAATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACGGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTATTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTCGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTGCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.85 MLPKSTGILWLDADHDDSSSWSRTNHHNDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSSLPPHKSSCFSSLLNVVCSNSFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQEPSLNNSEFPATRLLPVSDNPPAFGAGFNPAAAFESFDACGNALFQNRSKVLRPLEMFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLEGLRKMTGDEDIEDGSVDVSRLNYDSDEPNEYNKQEDNVNTKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16729218 16732094 - CePI673135_05g014320.1 Cec05g1432 203235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1432 538 MobiDBLite consensus disorder prediction 318 340 - -
Cec05g1432 538 CDD ACT_UUR-ACR-like 467 527 - -
Cec05g1432 538 FunFam BHLH transcription factor 343 411 - -
Cec05g1432 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983(InterPro)
Cec05g1432 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983(InterPro)
Cec05g1432 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cec05g1432 538 CDD bHLH_AtAMS_like 350 414 - -
Cec05g1432 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983(InterPro)
Cec05g1432 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 304 533 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec05g1432 538 Coils Coil 390 410 - -
Cec05g1432 538 Gene3D - 341 410 IPR036638 GO:0046983(InterPro)
Cec05g1432 538 Pfam Plant bHLH transcription factor, ACT-like domain 455 528 IPR054502 -
Cec05g1432 538 MobiDBLite consensus disorder prediction 305 348 - -
Cec05g1432 538 SMART finulus 353 402 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0384 Cec-Chr3:4303182 Cec05g1432 Cec-Chr5:16729218 1.70E-138 dispersed
Cec04g1513 Cec-Chr4:34660382 Cec05g1432 Cec-Chr5:16729218 2.40E-31 dispersed
Cec05g1432 Cec-Chr5:16729218 Cec11g1540 Cec-Chr11:29671983 3.50E-32 dispersed
Cec05g1432 Cec-Chr5:16729218 Cec08g1223 Cec-Chr8:24160848 4.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29590 PF00010 HLH 2.20E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1432 - - - 0.0