Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1527 ATGGAGAATTATCAGATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGAGGACTGTCGGCGTATCATCATGCCGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTGGGGATGAAGACAGAGGTGGATGCGGCGGCGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTCGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCGATGTGAAAAAGCAAGTGCAAAGACTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACATTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 522 46.17 MENYQMFFPCSSGGDGGGGLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEVDAAAAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCDVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19675822 19677894 - CePI673135_05g015270.1 Cec05g1527 203330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1527 173 ProSiteProfiles WRKY domain profile. 88 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1527 173 SMART WRKY_cls 93 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1527 173 FunFam WRKY transcription factor 57 79 153 - -
Cec05g1527 173 Pfam WRKY DNA -binding domain 94 150 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1527 173 Gene3D WRKY domain 77 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1527 173 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 153 IPR044810 GO:0003700(InterPro)
Cec05g1527 173 SUPERFAMILY WRKY DNA-binding domain 85 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1527 Cec-Chr5:19675822 Cec07g1664 Cec-Chr7:32229530 2.10E-47 dispersed
Cec05g1527 Cec-Chr5:19675822 Cec06g0447 Cec-Chr6:5039065 1.50E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29594 PF03106 WRKY 4.20E-26 CL0274 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1527 - - - 0.0