Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g1534 | ATGGATCCTAAAACTAAAACCTCATCAACAACCAACCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAATTAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG | 939 | 48.35 | MDPKTKTSSTTNQPQEVVANFLKPPEEELEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20053651 | 20054589 | + | CePI673135_05g015340.1 | Cec05g1534 | 203337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g1534 | 312 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cec05g1534 | 312 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 8 | 297 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cec05g1534 | 312 | ProSiteProfiles | TCP domain profile. | 74 | 128 | IPR017887 | - | |
Cec05g1534 | 312 | MobiDBLite | consensus disorder prediction | 285 | 312 | - | - | |
Cec05g1534 | 312 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cec05g1534 | 312 | Pfam | TCP family transcription factor | 73 | 179 | IPR017887 | - | |
Cec05g1534 | 312 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec04g1065 | Cec-Chr4:30184883 | Cec05g1534 | Cec-Chr5:20053651 | 6.90E-29 | dispersed | |
Cec05g0929 | Cec-Chr5:8120359 | Cec05g1534 | Cec-Chr5:20053651 | 1.20E-25 | dispersed | |
Cec05g1534 | Cec-Chr5:20053651 | Cec06g0201 | Cec-Chr6:2083440 | 4.20E-54 | dispersed | |
Cec05g1534 | Cec-Chr5:20053651 | Cec01g1783 | Cec-Chr1:32310893 | 1.60E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29595 | PF03634 | TCP | 3.70E-31 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g1534 | - | - | - | 0.0 |