Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1534 ATGGATCCTAAAACTAAAACCTCATCAACAACCAACCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAATTAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.35 MDPKTKTSSTTNQPQEVVANFLKPPEEELEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20053651 20054589 + CePI673135_05g015340.1 Cec05g1534 203337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1534 312 MobiDBLite consensus disorder prediction 1 47 - -
Cec05g1534 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec05g1534 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cec05g1534 312 MobiDBLite consensus disorder prediction 285 312 - -
Cec05g1534 312 MobiDBLite consensus disorder prediction 1 18 - -
Cec05g1534 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cec05g1534 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1065 Cec-Chr4:30184883 Cec05g1534 Cec-Chr5:20053651 6.90E-29 dispersed
Cec05g0929 Cec-Chr5:8120359 Cec05g1534 Cec-Chr5:20053651 1.20E-25 dispersed
Cec05g1534 Cec-Chr5:20053651 Cec06g0201 Cec-Chr6:2083440 4.20E-54 dispersed
Cec05g1534 Cec-Chr5:20053651 Cec01g1783 Cec-Chr1:32310893 1.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29595 PF03634 TCP 3.70E-31 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1534 - - - 0.0