Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1639 ATGAATTGTGAGAAGAACCCCATCATCGCCGACCTCCCTTCCGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCCTCTGTTGCAACAACGGCACCATCTTACCGCCACTGATGGATCCAAGCAAAGCAAGGTCCATTTTTCAGCTCCAAGTCTATAAGCTTCCCCCTGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAACGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGATCCAACCCAATTTCCTGACTCAACTGGACTTCAATCCATAACCACAGCCATTGCAAGTTGGCAAGTGGTTTGCAATATTACTACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAACTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATAACAGTGGTTGGACGGCGAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTCTACTCTTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTTTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCGCGAGTGCCAGGAAAGCAACAATCGGTAATCTCTTTCACTAAGAAGAATTTGAGGAACCTCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAATGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCTCACAGCCTCCATGTCAGCTCTGAACCTTTAATGCTGCTGCTCACAGTTATGGCTTTTTTCATTCTCTTCATCGATGGCTTTCATTGA 1110 42.79 MNCEKNPIIADLPSDRANDSKVGKLPLCCNNGTILPPLMDPSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVDPTQFPDSTGLQSITTAIASWQVVCNITTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCNPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYNSGWTARITLFNWEEYPFEDWFAAVQLDKAAKGYENVYSFNGTKLPPDMIKNTIFFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMLLLTVMAFFILFIDGFH 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26333362 26334471 - CePI673135_05g016390.1 Cec05g1639 203442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1639 369 Pfam COBRA-like protein 1 116 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cec05g1639 369 PANTHER COBRA-LIKE PROTEIN 7 1 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1639 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0753 Cec-Chr5:6214228 Cec05g1639 Cec-Chr5:26333362 1.40E-125 dispersed
Cec05g1639 Cec-Chr5:26333362 Cec06g1749 Cec-Chr6:31021881 4.70E-28 dispersed
Cec10g0538 Cec-Chr10:6523575 Cec05g1639 Cec-Chr5:26333362 9.30E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1750 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Cec07g1711 . 44 450 COBRA Gene Family AT5G60920 75.2 7.4e-200 693.3
Cec07g1712 . 31 426 COBRA Gene Family AT5G60920 68.2 1.1e-179 626.3
Cec06g1749 . 55 432 COBRA Gene Family AT5G60920 71.2 5.5e-179 624.0
Cec01g1708 . 37 427 COBRA Gene Family AT5G60920 59.2 3.3e-147 518.5
Cec05g1122 . 31 425 COBRA Gene Family AT5G60920 54.1 2.8e-130 462.2
Cec06g1750 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Cec07g1711 . 19 448 COBRA Gene Family AT3G02210 74.0 4.6e-203 704.1
Cec06g1749 . 27 453 COBRA Gene Family AT3G02210 66.2 1.2e-179 626.3
Cec07g1712 . 5 429 COBRA Gene Family AT3G02210 66.6 1.6e-179 625.9
Cec01g1708 . 11 423 COBRA Gene Family AT3G02210 57.6 1.3e-149 526.6
Cec05g1122 . 1 420 COBRA Gene Family AT3G02210 55.4 1.9e-140 496.1
Cec06g1750 . 21 446 COBRA Gene Family AT3G29810 75.0 3.8e-202 701.0
Cec07g1711 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Cec07g1712 . 14 428 COBRA Gene Family AT3G29810 66.3 1.6e-176 615.9
Cec06g1749 . 38 436 COBRA Gene Family AT3G29810 66.9 1.5e-174 609.4
Cec01g1708 . 24 428 COBRA Gene Family AT3G29810 57.7 6.0e-147 517.7
Cec05g1122 . 13 430 COBRA Gene Family AT3G29810 55.1 1.4e-140 496.5
Cec06g1749 . 32 363 COBRA Gene Family AT5G15630 83.4 3.0e-178 621.3
Cec07g1712 . 9 339 COBRA Gene Family AT5G15630 82.5 2.1e-176 615.1
Cec06g1750 . 31 361 COBRA Gene Family AT5G15630 73.2 1.5e-150 529.3
Cec07g1711 . 29 358 COBRA Gene Family AT5G15630 69.1 1.1e-145 513.1
Cec01g1708 . 15 334 COBRA Gene Family AT5G15630 60.2 4.8e-128 454.5
Cec05g1122 . 19 341 COBRA Gene Family AT5G15630 50.9 5.2e-98 354.8
Cec06g1750 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Cec07g1711 . 27 220 COBRA Gene Family AT5G60950 59.5 1.1e-63 240.0
Cec07g1712 . 27 207 COBRA Gene Family AT5G60950 57.5 1.4e-58 223.0
Cec06g1749 . 51 231 COBRA Gene Family AT5G60950 58.0 2.4e-58 222.2
Cec05g1122 . 12 413 COBRA Gene Family AT1G09790 60.2 4.0e-151 531.6
Cec07g1711 . 25 428 COBRA Gene Family AT1G09790 54.0 2.0e-134 476.1
Cec06g1749 . 41 434 COBRA Gene Family AT1G09790 53.7 2.9e-133 472.2
Cec06g1750 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Cec07g1712 . 3 410 COBRA Gene Family AT1G09790 51.1 5.7e-129 458.0
Cec05g0753 . 34 621 COBRA Gene Family AT4G16120 64.4 1.1e-242 836.3
Cec10g0538 . 166 774 COBRA Gene Family AT4G16120 54.2 4.3e-205 711.4
Cec05g1639 . 1 363 COBRA Gene Family AT4G16120 56.6 4.4e-125 445.7
Cec05g0753 . 11 627 COBRA Gene Family AT3G16860 61.7 6.2e-233 803.9
Cec10g0538 . 166 763 COBRA Gene Family AT3G16860 52.8 2.6e-194 675.6
Cec05g1639 . 1 348 COBRA Gene Family AT3G16860 55.1 7.4e-117 418.3
Cec05g0753 . 7 617 COBRA Gene Family AT5G49270 59.0 4.2e-229 791.2
Cec10g0538 . 166 761 COBRA Gene Family AT5G49270 52.2 1.9e-197 686.0
Cec05g1639 . 1 343 COBRA Gene Family AT5G49270 54.6 1.5e-117 420.6
Cec10g0538 . 106 781 COBRA Gene Family AT3G20580 59.4 9.8e-250 859.8
Cec05g0753 . 27 605 COBRA Gene Family AT3G20580 53.9 2.1e-199 692.6
Cec05g1639 . 1 363 COBRA Gene Family AT3G20580 64.1 3.4e-149 525.8
Cec10g0538 . 166 782 COBRA Gene Family AT4G27110 63.3 4.0e-243 837.8
Cec05g0753 . 24 623 COBRA Gene Family AT4G27110 51.0 1.2e-191 666.8
Cec05g1639 . 2 354 COBRA Gene Family AT4G27110 65.1 5.2e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55