Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1652 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTGGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTACTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCATGTACTCCGGCCACCCGTTGCATAA 708 49.29 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFTAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27116955 27119237 - CePI673135_05g016520.1 Cec05g1652 203455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1652 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Cec05g1652 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cec05g1652 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Cec05g1652 235 FunFam Transcription factor bHLH34 66 124 - -
Cec05g1652 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cec05g1652 235 CDD bZIP 141 173 - -
Cec05g1652 235 CDD bHLH_AtILR3_like 83 155 - -
Cec05g1652 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cec05g1652 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cec05g1652 235 Coils Coil 123 178 - -
Cec05g1652 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1203 Cec-Chr2:28309150 Cec05g1652 Cec-Chr5:27116955 2.80E-11 transposed
Cec04g1733 Cec-Chr4:36367063 Cec05g1652 Cec-Chr5:27116955 1.10E-09 transposed
Cec05g0505 Cec-Chr5:4045552 Cec05g1652 Cec-Chr5:27116955 2.10E-29 transposed
Cec10g0552 Cec-Chr10:6727668 Cec05g1652 Cec-Chr5:27116955 2.30E-76 wgd
Cec02g0867 Cec-Chr2:10780595 Cec05g1652 Cec-Chr5:27116955 7.70E-56 wgd
Cec03g0495 Cec-Chr3:5212254 Cec05g1652 Cec-Chr5:27116955 1.20E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29597 PF00010 HLH 1.10E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1652 - - - 0.0