Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1684 ATGAAGAAGTGCGAGCTGTGTGGGCAGCAAGCGAGGATGTTCTGTGAGTCGGATCAGGCGAACCTATGTTGGGACTGCGACGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGTATGCCAGTCGCCGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGATGTCCATGGTGGTAAATGCGAGCAAGGTGGATTTCAAGAGCGGCGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGATGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGAAGAGGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCTCCACCACCGCCTTCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCATCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACAGAGTACAAGGCCATTTTTCAATGACGAAGCGACTTCCTCGAGTTCCCTTAGGCCACTGAAGCAAGCAAGAGTTACAGGACCGACCCAATCAGCCACATCCACTCCGGATGTTGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCGTCTTCCCACCGACATTAACGATGCTTCCAAAATGATCTTTGGGATACGCAAAATGAGCAGAGATCAGAATCGTTGA 837 50.66 MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSPTPWAASGRKLTPTVSVCEGCVDVHGGKCEQGGFQERRRDNEEEVDGGDDFDDGEGFDSYEGGDSEEDDDGDEDEDEEEEDEDGENQVVPWSYASSSSPPPPSTVTSSSEGEISAGAGVASKRMREYGIDLDSDDEIECSSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSATSTPDVEACKAELKSTAVVRSIQRLQNRLPTDINDASKMIFGIRKMSRDQNR 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27986496 27987708 + CePI673135_05g016840.1 Cec05g1684 203487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1684 278 MobiDBLite consensus disorder prediction 140 165 - -
Cec05g1684 278 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270(InterPro)
Cec05g1684 278 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270(InterPro)
Cec05g1684 278 CDD Bbox1_BBX-like 3 45 IPR049808 -
Cec05g1684 278 SMART bboxneu5 1 45 IPR000315 GO:0008270(InterPro)
Cec05g1684 278 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 225 - -
Cec05g1684 278 MobiDBLite consensus disorder prediction 96 137 - -
Cec05g1684 278 MobiDBLite consensus disorder prediction 83 233 - -
Cec05g1684 278 MobiDBLite consensus disorder prediction 189 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1684 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0528 Cec-Chr3:5555241 Cec05g1684 Cec-Chr5:27986496 1.60E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g338 . . . . . Bpe08g01148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g01054 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01571 Cam05g1679 Cec05g1684 Cco05g1728 Clacu05g1670 Cmu05g1561 Cre05g1679 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29598 PF00643 zf-B_box 5.10E-06 No_clan Cec TR