Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1704 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGACCGGCGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAAGCGGAGACCAGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTGCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCAGCTATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTGGCAAGTCCGTTCATTCAAACTTGAAGGAAAAAGTGAACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGACATCACCCCCCACCAGCATTTGGTTCAACAACAGAGGTCGAATATAGTTTTGAGACCAACCAATTACATGATATAGACCAACCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTTGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCATCTTCCGTACTGGGAAGCAAGACAAAATTGGAATCCAGTTCATCACAAAGTATGTCAACATTCCAAGGGACGAAGTTGATGAATGGGAAATTGATGCAACCCTGCTAGTCTTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGGTTCTAAAAGATGAAAACTTGAACGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACACTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATACACGACTTTTTACATCAACAAAAGGGTGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATTCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGAGAACTTGACTCCGTTGCAAGCAGCAATTGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGTATGCTCATCCAATGATCGTGGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCTCAGAAATTACGAGACTTCTACAGCAGACGTTGCTGAAGGAGGCACTTCACGTTCCTGGAACAGATTATATAATAAGAAACTTGGGAGTGACAGGTGGTGGCAATGGCGATGAAACTGATGAAGGAGTTTCCTTAGGTGGTAGCAATGGTGACTGTGGAACATTGGAAAAAGTTTTAAGAGATGGTGGTAGCGATGTTAGTGAAGCTAATGAAGTTTTCTGGGATGGTGGTGGCGATGATTAA 1827 43.24 MAMDDTESCSSRPADDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWTHFHRLPARYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVHSNLKEKVNQRFSGYDSNQRHHPPPAFGSTTEVEYSFETNQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPCIFRTGKQDKIGIQFITKYVNIPRDEVDEWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKVLKDENLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPHFFIVTEYMSGGSIHDFLHQQKGVLSFPSLLRVAVDVSKGMNYLHQKNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDRKADVYSFGIVLWELLTGQLPYENLTPLQAAIGVVQKGLRPKIPRYAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTLLKEALHVPGTDYIIRNLGVTGGGNGDETDEGVSLGGSNGDCGTLEKVLRDGGSDVSEANEVFWDGGGDD 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28327378 28339844 - CePI673135_05g017040.1 Cec05g1704 203507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1704 608 Coils Coil 223 243 - -
Cec05g1704 608 FunFam Serine/threonine-protein kinase isoform 1 276 364 - -
Cec05g1704 608 Gene3D Transferase(Phosphotransferase) domain 1 365 547 - -
Cec05g1704 608 CDD STKc_MAP3K-like 292 535 - -
Cec05g1704 608 Pfam Protein tyrosine and serine/threonine kinase 287 534 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 SUPERFAMILY ACT-like 171 238 IPR045865 -
Cec05g1704 608 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 SUPERFAMILY Protein kinase-like (PK-like) 267 534 IPR011009 -
Cec05g1704 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 ProSiteProfiles ACT domain profile. 173 249 IPR002912 -
Cec05g1704 608 SMART serkin_6 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1704 608 Gene3D Phosphorylase Kinase; domain 1 273 364 - -
Cec05g1704 608 Gene3D - 171 244 - -
Cec05g1704 608 PANTHER SERINE-THREONINE PROTEIN KINASE 155 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0200 Cec-Chr1:1940394 Cec05g1704 Cec-Chr5:28327378 2.10E-24 dispersed
Cec05g0566 Cec-Chr5:4600154 Cec05g1704 Cec-Chr5:28327378 1.30E-20 dispersed
Cec05g1704 Cec-Chr5:28327378 Cec10g0042 Cec-Chr10:495079 6.70E-181 dispersed
Cec05g1704 Cec-Chr5:28327378 Cec01g1470 Cec-Chr1:29367565 1.30E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72013 PF07714 PK_Tyr_Ser-Thr 7.20E-72 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1704 - - - 0.0