Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1706 ATGGCCGCCGTCACCTCCGCCGCCGTCGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCCGTGGCAACCACCGCCGCCAGCGCCCTACTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGTGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA 510 59.8 MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAVATTAASALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28377516 28378025 + CePI673135_05g017060.1 Cec05g1706 203509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1706 169 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 29 168 - GO:0009543(PANTHER)|GO:0046028(PANTHER)
Cec05g1706 169 Gene3D - 71 169 IPR008972 -
Cec05g1706 169 PRINTS Plastocyanin signature 76 95 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 PRINTS Plastocyanin signature 99 117 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 PRINTS Plastocyanin signature 148 167 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 NCBIfam plastocyanin 71 169 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 CDD Plastocyanin 71 169 IPR002387 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 Pfam Copper binding proteins, plastocyanin/azurin family 72 169 IPR000923 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 ProSitePatterns Type-1 copper (blue) proteins signature. 148 162 IPR028871 -
Cec05g1706 169 PRINTS Type I copper blue protein family signature 146 160 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 PRINTS Type I copper blue protein family signature 90 103 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 PRINTS Type I copper blue protein family signature 105 120 IPR001235 GO:0005507(InterPro)|GO:0009055(InterPro)
Cec05g1706 169 SUPERFAMILY Cupredoxins 68 169 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1706 K02638 - - csv:101211484 267.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30