Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec05g1719 | ATGGCTCAAACCACGCCCAATCACACTCAGATAGTCTGCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCAGTCCATATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACGATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCCAAAAACGAGTGGGGCATCACCATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTAATCACGAAAGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCTGCTTCCTGTTTGAACTGCGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAGAATTTGCAGTTTACATACAACGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCAATGGACGCAGCGGCGCCGTTGCTGTGTGCCGGAATAACAGTGTTCACGCCGATGAAAGATCTCGGCCTGATCGAGTCGGCGAGAAAGAAGGTGGGAGTGGTGGGGCTTGGAGGTCTGGGCCACATAGCAGTAAAATTTGCAAAGGCGTTTGGACACCATGTGACTGTGATCAGCACCTCTGCTTCAAAGGAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTGAGCAAATGCAGAGTTATAAGAGGACGTTGGATTTCATATTGGACACAGTGTCGGCGCAGCACTGTATTGGACCAATCTTAGAACTGCTAAAAGTAAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATTCAATTGCCCTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATAGGTGGAATACAAGAGACACAAGAGATGATGGATTTGTGTGGGAAATACAAAATTACAAGTGATATTGAAGTGATTAAGCCAGAAGATATCAACCATGCTATGGAACGTCTTCTCAAAAGCGATGTTCGATATCGATTTGTCATTGACATTGCCCAAAACATAATCCAATAA | 1080 | 46.11 | MAQTTPNHTQIVCGWAAHDSSGKISPYTFKRRENGPEDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGSNVKKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLGLIESARKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKERLGADDFIVSKDPEQMQSYKRTLDFILDTVSAQHCIGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYKITSDIEVIKPEDINHAMERLLKSDVRYRFVIDIAQNIIQ | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 28724398 | 28726874 | - | CePI673135_05g017190.1 | Cec05g1719 | 203522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec05g1719 | 359 | Gene3D | - | 166 | 323 | - | - | |
| Cec05g1719 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 15 | 176 | - | - | |
| Cec05g1719 | 359 | SUPERFAMILY | GroES-like | 17 | 181 | IPR011032 | - | |
| Cec05g1719 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
| Cec05g1719 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 153 | IPR013154 | - | |
| Cec05g1719 | 359 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER) | |
| Cec05g1719 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 321 | IPR036291 | - | |
| Cec05g1719 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 70 | 84 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Cec05g1719 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 166 | 323 | - | - | |
| Cec05g1719 | 359 | SMART | PKS_ER_names_mod | 22 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Cec05g1719 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) | |
| Cec05g1719 | 359 | Gene3D | - | 15 | 353 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec04g1521 | Cec-Chr4:34726967 | Cec05g1719 | Cec-Chr5:28724398 | 9.30E-122 | dispersed | |
| Cec05g1719 | Cec-Chr5:28724398 | Cec09g2006 | Cec-Chr9:37085695 | 3.50E-12 | dispersed | |
| Cec05g1719 | Cec-Chr5:28724398 | Cec05g1205 | Cec-Chr5:11082250 | 3.80E-99 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec05g1719 | K00083 | - | csv:101213170 | 669.848 |