Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1740 ATGGATGTGAACGCCAATAAACCTTTGCAATTTGTTCGAAGAAGTTCGTCTCAGAAGGAAACTGAAAATGGAGGTCAAGTTATGGTTGAGATTAGCAGCGTTGAAAATGGCTACTCTGTACCGAAGCAAAACAGAGTCGATTCGCAGACCAAAGAGCCGACCGATTCAAGCATTGGCTATGGCTACGATTCACCGCTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCTAGTTCAAATGGAACCCTCACGCCCAGAAAATCTCTCAGAAGATCAATTCTCTCGAAACCCAAATCCAGATTTGGGGACCAGCCTGGTTATATCGATTCAGACATTTTTGAGGAGAATCATTTGTCGTTGAGAGATCAAATCGGTGCAACTTCATCCAGAAGCTCTACTCTCAACACGCCGAAGGCTCAACCTGAGGAAGAAGATGATGAGGAAATCTTCAAGATAGAGCAGTTGAATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTAAGTGGGTTGGAGTTTTTTGCATAATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGATTGTATTTTTGATCGAGAGGAACTTTTTGCTTAAGAAAAAAGTACTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGGGTCCTTGTTCGATCGGAGAAACCATACAATTCCAAGTTCGAGGATCACTACAAAGATTTTGGATGCTGTTACATGGACTCTGGTTAGCCTTCTTATAGGAGCATTCTTGTGGTTGGTAAAAACACTGTTGCTGAAAATACTGGCCTCTAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACTCTCTCAAGGTCTCCATTAATGGAGGGAGCTGAAATTACTCCAAAGTCCAGCAGTGGTAGACTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCAGAGATGTCGATCTCACAAATACTTGATGAAAGCTACCAAGATGTTGCTGATGGCGAGATCACAGATGAGATGGAAGTTGCCCGAGCCGCTGCTTACAAGATATTCAACAATGTTGCTCTTCATGGAAACAAGTTCATAGAGGAAGAGGATCTTCTGAGATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGGTAGATGAGACGAGGAAAATTGACAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGAAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCTGTGAGGCAATTGAATAATTTAGTAACAGCGCTTCTTATAATAGTAACCGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAACTCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTTGGTGACCGTTGTGTTGTCGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTACTACAGAAGTCCAGACATGGGCGACACTGTTGAATTCTCAATCGGTTTCGCAACACCATTGGAGAGGATTGGGCTCTTGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACATTGGCATCCAAATCATAATGTGGTGGTGCAGGAGATCGAAAGCGTGAATAAGATAAAGATCGCTCTTTATACAAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTACATCTCTTCCCAGTTGAGGGCACTGAAGTCTACAGAAGATCTTGA 2202 41.37 MDVNANKPLQFVRRSSSQKETENGGQVMVEISSVENGYSVPKQNRVDSQTKEPTDSSIGYGYDSPLAPTANKPPKIPSSNGTLTPRKSLRRSILSKPKSRFGDQPGYIDSDIFEENHLSLRDQIGATSSRSSTLNTPKAQPEEEDDEEIFKIEQLNNKHKKVKVKTVIKWVGVFCIIGCLVASLTVNPLKNRFLWGLRVWKWCLLATVILCGMIFTHWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDRRNHTIPSSRITTKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRSPLMEGAEITPKSSSGRLSLKSKKSDRKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQDVADGEITDEMEVARAAAYKIFNNVALHGNKFIEEEDLLRFMIKEEVDLVLPHFEVDETRKIDRKALTNWVVKVYQGRKTLAHALKDTKTAVRQLNNLVTALLIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNSCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGDTVEFSIGFATPLERIGLLKEKIKRYLEKNPQHWHPNHNVVVQEIESVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVEGTEVYRRS 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28950922 28953762 + CePI673135_05g017400.1 Cec05g1740 203543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1740 733 SUPERFAMILY Sm-like ribonucleoproteins 554 614 IPR010920 -
Cec05g1740 733 MobiDBLite consensus disorder prediction 73 89 - -
Cec05g1740 733 MobiDBLite consensus disorder prediction 9 57 - -
Cec05g1740 733 Gene3D - 565 614 IPR023408 -
Cec05g1740 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 51 721 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Cec05g1740 733 Pfam Mechanosensitive ion channel, beta-domain 558 615 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec05g1740 733 MobiDBLite consensus disorder prediction 127 146 - -
Cec05g1740 733 MobiDBLite consensus disorder prediction 1 108 - -
Cec05g1740 733 FunFam Predicted mechanosensitive ion channel 565 614 - -
Cec05g1740 733 PIRSF Memb_At2g17000 4 733 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1740 K22048 - - csv:101217197 1159.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1583 Cec-Chr3:33952431 Cec05g1740 Cec-Chr5:28950922 4.00E-183 dispersed
Cec05g1740 Cec-Chr5:28950922 Cec06g0871 Cec-Chr6:11133074 1.00E-146 dispersed
Cec05g1736 Cec-Chr5:28909399 Cec05g1740 Cec-Chr5:28950922 7.90E-298 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0166 . 263 654 Mechanosensitive Ion Channel Family AT4G00290 67.3 5.7e-154 541.2
Cec08g1199 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.4 4.8e-196 681.4
Cec10g0751 . 106 779 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.1e-189 660.2
Cec08g1199 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 57.7 2.0e-197 686.0
Cec10g0751 . 94 556 Mechanosensitive Ion Channel Family AT1G58200 65.2 8.3e-172 600.9
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 55.1 2.8e-260 895.2
Cec02g0406 . 90 939 Mechanosensitive Ion Channel Family AT1G53470 51.3 2.8e-236 815.5
Cec02g1160 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 52.9 4.4e-247 851.3
Cec02g1160 . 43 928 Mechanosensitive Ion Channel Family AT1G78610 58.6 5.2e-280 960.7
Cec02g0406 . 59 937 Mechanosensitive Ion Channel Family AT1G78610 56.2 1.1e-266 916.4
Cec02g1160 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.4e-237 817.8
Cec02g0406 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.4 7.0e-221 764.2
Cec05g1740 . 69 721 Mechanosensitive Ion Channel Family AT5G19520 52.9 3.3e-182 635.6
Cec05g1740 . 64 721 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.2e-202 702.6
Cec03g1583 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.6 8.6e-199 690.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57