Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1747 ATGCAACGAAATAACAGAATAGCGTCCTTGTCAGCAACACCCAAATGGGTTTCTTCCATTACCCATCTCTGCAACCAAAGAAAGCGACCCCTTGTTACTGAGAGCTTGCATTTGCAAATTTGCAACCAGAAACGAAGAGAGAGAGAAAAAGGAAATGGGTTTAAGGGTTGCTGTGTGATGTTGCAGGTTCTTGTTACTAAGCAGCCATGGAAAGTGCAACAATGTAAGATGAAGTCTGTGAAGAGGGCAGCAATGGCACTTCCTGTTGAGCTTGTTGTTTTGGCTTTTCTCTTCTGTGCTACCATTGGTGTGGTGGACTCCGATGATGGAGCAACGTTGTTGGAGATAAAGAAATCATTCAGGGACGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCATCAGACTACTGTATGTGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTTATCTCTCTTAATCTTTCAGGTCTCAATTTGGATGGGGAAATTTCTCCTTCAGTCGGGAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGGGATTGCTTTTCGTTAATAAATCTGGATTTGTCGTTTAATGAGATATATGGAGACATACCATTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTTGTTCTGAAAAATAATCGACTGATTGGGCCGATCCCATCTACTTTATCTCAGATTCCAAACTTGAAGGTCTTGGATCTGGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGTGGCAACAATTTGGTGGGCACACTATCTCCAGATATGTGTCAGCTGACTGGTTTATGGTATTTCGATGTGAGGAACAACAGTTTAACTGGCGGCATACCCCAAACCATAGGCAACTGCACAGCCTTCCAGGTCTTGGACTTGTCATACAATCATCTCACTGGAGAGATACCATTTAACATTGGTTTCCTTCAAGTAGCCACATTGTCCTTACAGGGTAATCAGCTATCAGGTCCCATTCCACCCGTAATTGGTCTGATGCAGGCGCTTGCTGTGCTAGATTTGAGTTGCAACATGTTAACTGGTCCAATCCCCTCTATCTTAGGGAATCTGACTTATACCGAGAAGCTGTACTTGCATAGTAACAAGCTCACTGGGCCCATTCCAGCAGAGCTTGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGAAAACTCACCGATTTATTCGATCTAAATGTTGCTAATAACAATCTCGGAGGGCCTATCCCTGACAATCTTAGCTCTTGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACTATTCCCCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAATCTCTCCACGAATGATCTACAAGGTCCTATTCCAGTCGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATTTCTTCCTCCTTCGGTGATCTGGAACATCTGCTAAAGCTAAATTTAAGTAGGAATCATTTGACGGGATTTATTCCAGCTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAACCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACCTGACGTCGCTGATTAGCTGCCTAAGTCTTACTGAATTAAATGTATCTTATAACAATCTAGCTGGTGAGATTCCGACAAGCAACAACTTCTCTAGATTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAATAGCAACAACTATCCCTGCCATGAACCTCATACGACAGATCGGGTGACCATATCTAAAGCTGCTATCCTGGGAATTGCTCTCGGTGCCCTTGTGATCCTTCTAATGATCCTTCTAACAGTGTGCCGTCCAAACAACACAATACCTTTTCCAGATGGATCACTTGACAAACCAGTTACGTACTCCACTCCCAAGCTAGTGATCCTTCACATGAACATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATTTGAACGAAAAGTACATTATTGGACATGGAGCTTCAAGCACAGTCTACAAGTGTGTACTGAAGAATTGTAAACCTGTGGCTGTCAAAAAGCTCTTTTCCCACCAGCCCCATAGCATGAAGGGATTCGAGACCGAACTGGAAACTGTGGGTAGCATCAAGCACAGAAATCTAGTAAGCCTCCAAGGATACTCCTTATCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGATCATCTACATGGGTCTAGCTCTACAAAGAAGAAAAAGCTTGACTGGGACACTCGGCTCAATATTGCCCATGGAGCAGCCCAGGGACTATCATATCTACACCATGATTGTAGCCCTCGCATTATCCACAGGGATGTTAAGTCATCTAACATTTTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTTGGTATTGCTAAGAGCTTATGCACCTCGAAGACATATACATCCACTTATATCATGGGAACCATTGGATACATAGATCCAGAGTATGCTCGGACTTCTCGACTTACTGAAAAGTCCGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACAGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAAACAGCCAACAATGCTGTAATGGAGACGGTTGATGCTGAAATAACTGCAACTTGCAAGGACCTTGTAGCTGTAAAGAAGGCATTTCAGCTGGCTCTCCTTTGCACCAAGAGGCAGCCATCCGACCGACCAACAATGCACGAGGTAACACGCGTCATTGCGAGTCTTCTGCCCTCCGCCACAACACTAAAGCAAACACCAACCATAACATCCATGCCCCCATCTGCAAAATCCCCTTGCTACAAGGATGAATATGCAAATCTAAAAACGCCGCACGTGCTGAACTGCCCAACCATGAGCACCTCAGATGCTCAGCTCTTCCTCAAGTTCGGAGAGGTAATATCACAAAACATGTACGGTTTGTCAATTTACTTTAACCAGGCAATGATTTCAGGGGAGAAAAAATCATCTATACTGAAAGGCAAGCAGGAAAAGAAACTCATCAATGTCATTGGGAATGATGCTTACAAAATGCTTAAGCAACGAGCAAATTGCAGCATAGTGCATGTCTTACATTCTCAAGATCTAGAAGAAAGAAGCCGTAGTGAAATCCAACCAGAAATGAAGCTCATGGGCAAATATGGGACCCGGATCCTATGA 3444 42.97 MQRNNRIASLSATPKWVSSITHLCNQRKRPLVTESLHLQICNQKRREREKGNGFKGCCVMLQVLVTKQPWKVQQCKMKSVKRAAMALPVELVVLAFLFCATIGVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSSDYCMWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCFSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGGIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGPIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSTNDLQGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDLTSLISCLSLTELNVSYNNLAGEIPTSNNFSRFSSDSFLGNLALCGYWNSNNYPCHEPHTTDRVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLNEKYIIGHGASSTVYKCVLKNCKPVAVKKLFSHQPHSMKGFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDAEITATCKDLVAVKKAFQLALLCTKRQPSDRPTMHEVTRVIASLLPSATTLKQTPTITSMPPSAKSPCYKDEYANLKTPHVLNCPTMSTSDAQLFLKFGEVISQNMYGLSIYFNQAMISGEKKSSILKGKQEKKLINVIGNDAYKMLKQRANCSIVHVLHSQDLEERSRSEIQPEMKLMGKYGTRIL 1147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29074561 29083872 + CePI673135_05g017470.1 Cec05g1747 203550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1747 1147 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 381 654 - -
Cec05g1747 1147 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 106 270 - -
Cec05g1747 1147 ProSiteProfiles Protein kinase domain profile. 733 1005 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1747 1147 Gene3D Ribonuclease Inhibitor 270 342 IPR032675 -
Cec05g1747 1147 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1747 1147 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 704 808 - -
Cec05g1747 1147 Gene3D Transferase(Phosphotransferase) domain 1 809 1017 - -
Cec05g1747 1147 ProSitePatterns Protein kinases ATP-binding region signature. 739 762 IPR017441 GO:0005524(InterPro)
Cec05g1747 1147 SMART serkin_6 733 1005 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1747 1147 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 809 1012 - -
Cec05g1747 1147 Pfam Protein kinase domain 735 998 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1747 1147 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 601 1002 IPR050647 GO:0001558(PANTHER)|GO:0010286(PANTHER)
Cec05g1747 1147 Gene3D Ribonuclease Inhibitor 343 653 IPR032675 -
Cec05g1747 1147 SUPERFAMILY L domain-like 133 384 - -
Cec05g1747 1147 Gene3D Ribonuclease Inhibitor 106 269 IPR032675 -
Cec05g1747 1147 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 271 380 - -
Cec05g1747 1147 Pfam Leucine Rich Repeat 177 198 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 393 413 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 415 437 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 606 624 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 Pfam Leucine Rich Repeat 322 341 IPR001611 GO:0005515(InterPro)
Cec05g1747 1147 CDD STKc_IRAK 739 1001 - -
Cec05g1747 1147 SUPERFAMILY L domain-like 343 631 - -
Cec05g1747 1147 SUPERFAMILY Protein kinase-like (PK-like) 711 999 IPR011009 -
Cec05g1747 1147 Gene3D Phosphorylase Kinase; domain 1 715 808 - -
Cec05g1747 1147 SMART LRR_typ_2 533 556 IPR003591 -
Cec05g1747 1147 SMART LRR_typ_2 174 198 IPR003591 -
Cec05g1747 1147 SMART LRR_typ_2 413 437 IPR003591 -
Cec05g1747 1147 SMART LRR_typ_2 246 270 IPR003591 -
Cec05g1747 1147 Pfam Leucine rich repeat N-terminal domain 107 147 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1747 Cec-Chr5:29074561 Cec09g1405 Cec-Chr9:20059145 4.80E-156 dispersed
Cec05g1747 Cec-Chr5:29074561 Cec01g1526 Cec-Chr1:29863629 2.70E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72017 PF00069 Pkinase 5.50E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1747 K20718 - csv:101214398 1858.57