Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1772 ATGCTTGCTTCCAAGGCTGTAGCTGAGGCTCACAAAAAGAGTGGTGTACCGTTGTTGCATGTTTGCCACGTGTGTGGTGTGGCCCGGAGTAAATACGACCATTCCAACGGTTCTTCGAAATCTATCACGGTAGCATTGACTCAGTCCTACCGTAAGCTCACCTCTTCCTACGGCGACGCGTTCCAGTTCAATTTGGGCCGTTGGGCAGCTCCACGGGCATGTGAGGAACGGCTTATTCCTTCCACATCTGTAACCATAGCTACTAGATACTGTTTGTTAGTTTTCTTTTTTCTTTCTTCCATTTTGATCGAAGAGATTGGAGCTGGGCATTTTCAGAGCCTAGACAGTATGGGCTATCTGAATTCAGTCTTGTCTTGCTCGAGCCAGATTCATGCTGCTGAGGAGGCACCTGTAAGCGGCGGAGGATTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTATGAGACACGAATAGATGGTGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGTCATGGCGGAGCTCGAGCTGCGGAGTATGTTAAGCACAATCTTTTTAGTAACTTGATCAGCCATCCAAAGTTCATATCGGATACCAAGTCCGCTATAGCTGATGCATACAACCACACAGACACAGAATTTCTTAAGTCGGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGTGACTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAATATGTTGTTGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAATTTCTTATACTTGCAAGTGATGGACTGTGGGATGTTGTCTCTAATGAGGAAGCCGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAAGAAGCATATCAGAGAGGCAGTGCAGATAACATTACTTGCGTCATCGTTCGTTTCTTGGCGAATCAAGGAAGTCCCTCTCTTGCAACATCTGGGGTGAGAGTTGAACTCTTGACAAAAGCCTTGGTCAAAAGTCCAACTCTCGACCAAAGCAGCCGCACTGCCCTCCAATCCCGTCGTTTGCTCTCAGCCAGGTCTACCTTCCTTGCTTGCCTACCGAATTCCGTCGTCTGCCGCGAGCTAGGTCTACCGTCCAGTTGCATCGCCTACCGCGAGCCAGGTCTGCTGCTCCAGTGA 1428 47.83 MLASKAVAEAHKKSGVPLLHVCHVCGVARSKYDHSNGSSKSITVALTQSYRKLTSSYGDAFQFNLGRWAAPRACEERLIPSTSVTIATRYCLLVFFFLSSILIEEIGAGHFQSLDSMGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHNLFSNLISHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVIVRFLANQGSPSLATSGVRVELLTKALVKSPTLDQSSRTALQSRRLLSARSTFLACLPNSVVCRELGLPSSCIAYREPGLLLQ 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29554023 29566841 - CePI673135_05g017720.1 Cec05g1772 203575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1772 475 ProSitePatterns PPM-type phosphatase domain signature. 181 189 IPR000222 GO:0043169(InterPro)
Cec05g1772 475 SMART PP2C_4 140 394 IPR001932 -
Cec05g1772 475 PANTHER PROTEIN PHOSPHATASE 134 395 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec05g1772 475 Gene3D - 142 400 IPR036457 -
Cec05g1772 475 SMART PP2C_SIG_2 161 396 IPR001932 -
Cec05g1772 475 FunFam probable protein phosphatase 2C 59 142 400 - -
Cec05g1772 475 ProSiteProfiles PPM-type phosphatase domain profile. 150 396 IPR001932 -
Cec05g1772 475 CDD PP2Cc 149 396 IPR001932 -
Cec05g1772 475 Pfam Protein phosphatase 2C 179 389 IPR001932 -
Cec05g1772 475 SUPERFAMILY PP2C-like 144 396 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1048 Cec-Chr5:9171551 Cec05g1772 Cec-Chr5:29554023 1.10E-93 dispersed
Cec05g1772 Cec-Chr5:29554023 Cec08g0666 Cec-Chr8:18363502 1.50E-95 dispersed
Cec05g1772 Cec-Chr5:29554023 Cec11g1465 Cec-Chr11:28853053 2.10E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1772 K17506 - csv:101216117 574.318