Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1788 ATGGGTAGCCAAACTATTCCAAGCCATGAACGCTCCAGAACATATTGGACACCAGTAATGGAACGTTACTTTATTGATCTTATGTTGGAGCAGCTTCACCGAGGAAACCGGAGTGGGCACACTTTCAACAAGCAGGCATGGACGGATATGCTTACAATGTTCAATACAAAATTTGGATCTCAGTACGATAAAGATGTATTGAAGAGTCGCTATACAAATTTGTGGAAGCAATTCAACGATGTGAAGAATCTATTAGGTCATAGTGGTTTTTCCTGGGACGAAGGTCGACAGATGGTAATAGCTGATGACTATGTATGGGACATTTACATCAAGGCCCATCCGGATGCACGATCCTATAAAACTAAAGCAGTACTGAATTTTAATGATTTATGCCTGATATATGGATACACTAATGCTGATGGAAGATACAGTCGATCAAGTCATGATATAGACTTTGATGATGAAGTCCAGGCTGTAAATACAGGTGATACCATTGGTTGCCCTGCACCTCCCGATCGTCCAAGGACAGATTGGACGCTAGAAATGGACCAGTATTTCATTGAGCTTATGCTGGATCAAGTAGGAAGAGGCAATAAGACGTCTAATACATTCAATAAGCAAGCATGGACTGATATGCTTGCATTGTTTAATGCTAAATTCGGTCCTCAACACGGTAAAAGGGTGTTAAGACACCGATATAAGAAATTATGGAAATACTACAGTGATATTATGAATCTACTTCAACAAAATGGATTTTGCTGGGATGAAGTACAGCAAATGGTGGTTGCTGCTGATGATATTTGGGATGCTTATGTTAAGACACACCCATTTGCACGAAGTTATAGAATGAAAGCCTTGCCAAACTACTATGACTTGGTTCTCATATATGGAAATGTAATTGATAATGAGAACCAGAATCATTTGCATCTAGATAAAAACCTTCCAGACGACATATCAGAGGTAAAGGGTGGAGAATCAAATGAGAATCAAATGACAACTGTCAGCGATCGTACAAGAACATATTGGACGCCCCCGATGGATCGTTACCTCATAGACTTGCTACTAGAACAGGTGCATAGGGGCAATAAAATAGGTCAAACATTTGTTAGTCATGCTTGGACTGACATGGTTACTGCTTTCAATGCCCAATTCAGAGCTCACCATGACAAGGATGTGCTGAAAAATCGATACAAACATTTGAGACGGTTGTATAATGAAATAAAGATTCTTCTCGAACAGAGAGGATTTTCATGGGATGAAAATCGTGAAATCGTTACTGCAGATGATCATGTTTGGGATGCTTATACCAAGGATCACCCTGATTCCCGATCATATAGAGTTAAAACTGTACCAAGCTATCACAAGTTATGTTTTATATTTGGTGAAGAAAGTTCTGACAGAAGATATAGTCGTTTGGCCCATGATACCGATCCAAGTAATGGAGTGCCTGTTCTGATGGCTGATGAAAGGAAAAATGATCAAGTCCCTGCTGAACCTTTACCCATGATAGATTGGACACCGCAGATGGATCGCTCTTTTATTGATCTTATGCTTGAACAATTGCAAGAAGGAAATACTTTTGGCCAAGCATTTAGCGAGCAAGCATGGACTCTCATGATTATATCATTCAATGAGAGGTTCAAACTTCAATGTGACAGATATGTTCTAGAAGATCGTTATTTCTGGTGGATGAAGCAATACAGCAACATCTACAATCTTCTCAATCGCAGGGGATTCATGTGGAATGAATCTCAACAATTGATTACTGCTGAGGATGAACTTTGGGAAGCTTATGGAAAGGAACATCCAGATGCCCTCTTGTACAAAGACAAATTCCTCGGCTACTATACGGATTTGTGCAAGATTTTTGGGAACCTTTTAGATACAGTAGTCAATGGTCAGTGTACAGGCGAAACCGATGCTGAAAATGTGGAGATTAAGATGGGTGAAAATGAACACCTACTCCTAACATCGAGAGAGATTCAAAATTCTCAACAGAGAAAGCGTCCTGCAGAGACGATATCATTGGACACAGAGCTCTCTAAGAAAGTGCATAGAACCAAGAACAACGTGCAGAAAGCTCTCTCTGAGATGGCAGGCGTAGTCACTAGATTGGTGAACATGAAACAGCACCATAACTATAAAGCTGTGGAAGGTGCTATTGATGCACTTCAAGCTATACCAGACATCGATGATGAACTTATGTTGGATGCTTGTGACCTCTTAGAAGATGAAAGGAAGGCAAAAACATTTGTGGCTTTGGATGCAACCCTGCGAAAGAAGTGGTTACTAAGAAAGCTTCGTTCGCAATAG 2313 40.29 MGSQTIPSHERSRTYWTPVMERYFIDLMLEQLHRGNRSGHTFNKQAWTDMLTMFNTKFGSQYDKDVLKSRYTNLWKQFNDVKNLLGHSGFSWDEGRQMVIADDYVWDIYIKAHPDARSYKTKAVLNFNDLCLIYGYTNADGRYSRSSHDIDFDDEVQAVNTGDTIGCPAPPDRPRTDWTLEMDQYFIELMLDQVGRGNKTSNTFNKQAWTDMLALFNAKFGPQHGKRVLRHRYKKLWKYYSDIMNLLQQNGFCWDEVQQMVVAADDIWDAYVKTHPFARSYRMKALPNYYDLVLIYGNVIDNENQNHLHLDKNLPDDISEVKGGESNENQMTTVSDRTRTYWTPPMDRYLIDLLLEQVHRGNKIGQTFVSHAWTDMVTAFNAQFRAHHDKDVLKNRYKHLRRLYNEIKILLEQRGFSWDENREIVTADDHVWDAYTKDHPDSRSYRVKTVPSYHKLCFIFGEESSDRRYSRLAHDTDPSNGVPVLMADERKNDQVPAEPLPMIDWTPQMDRSFIDLMLEQLQEGNTFGQAFSEQAWTLMIISFNERFKLQCDRYVLEDRYFWWMKQYSNIYNLLNRRGFMWNESQQLITAEDELWEAYGKEHPDALLYKDKFLGYYTDLCKIFGNLLDTVVNGQCTGETDAENVEIKMGENEHLLLTSREIQNSQQRKRPAETISLDTELSKKVHRTKNNVQKALSEMAGVVTRLVNMKQHHNYKAVEGAIDALQAIPDIDDELMLDACDLLEDERKAKTFVALDATLRKKWLLRKLRSQ 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29759015 29762414 + CePI673135_05g017880.1 Cec05g1788 203591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1788 770 PANTHER EXPRESSED PROTEIN 7 158 - -
Cec05g1788 770 Pfam Myb/SANT-like DNA-binding domain 178 271 IPR024752 -
Cec05g1788 770 Pfam Myb/SANT-like DNA-binding domain 505 598 IPR024752 -
Cec05g1788 770 Pfam Myb/SANT-like DNA-binding domain 341 435 IPR024752 -
Cec05g1788 770 Pfam Myb/SANT-like DNA-binding domain 15 109 IPR024752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1788 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1739 Cec-Chr3:35655086 Cec05g1788 Cec-Chr5:29759015 6.30E-173 dispersed
Cec05g1788 Cec-Chr5:29759015 Cec10g1523 Cec-Chr10:29715539 1.50E-12 dispersed
Cec10g0544 Cec-Chr10:6579492 Cec05g1788 Cec-Chr5:29759015 2.00E-07 dispersed
Cec05g1788 Cec-Chr5:29759015 Cec09g0537 Cec-Chr9:4618745 3.90E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g595 . . . . Bpe02g01266 . . . . . . . Car09g00350 . . . Cpe06g00286 . . . . . . . Cla05g01667 Cam05g1782 Cec05g1788 Cco05g1847 Clacu05g1770 Cmu05g1655 Cre05g1784 Cone4ag1737 Cone7ag1657 Cone17ag0974 Cone20ag0315 . . . . . Blo18g00251 Bda01g01017 . . . . . . . Cmo09g00402 Cma09g00399 . . . . . Bhi09g03029 . . . . . . . . . . . . . . . . Cme07g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006000 1 7 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39