Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1800 ATGAAAGCGCAGACTCTAACTGTAACTACCATTTTCAGTGCTCTCTTCTTCTTCTTCTTCTTCTTCATCAGTCAATTCCTGCCTGTTCTCTCCTTCACTCGACCACAATGCAAGGCTTGGCTTGTACAATCAATTCCCACCGATATGCCGCAGCTTCAGCGGGTTCAAGGCCTCCTCTCCACTCGAGATGTATTCGTATGGTTAGCAGGGAACTCGACGCAGCGTTTGGACATCATTGCTCAATACTGGGAATTACTTGCTGGTCCCGATGATTCTCAATCGGGGGATTTTGGATACTCGAATGAGGATTTGAAGAAATTTGGGGCTAATAAAGGTTGTGATGTTTATTCAGCCATAGAGAAAGCTGCCGATCGCAATGTCAATGTCAGGCTGGTATCTCACTCGGGGGTGTATCCCCACTATGGTAAAGAAGCAGCTGACTTAGCATCTGGAAGGCCAAACGTGCAGAATGTAACTTTATTACTCGGTGATTGGTTTGGGTCAGGCATAGTCCATTCCAAAGTTTGGATATCTGATGATAAAGATGTGTATATAGGATCTGCAAACCAGGATTGGAAATCTCTTTCACAGGTGAAGGAACTCGGAATATATCTTACTGGCTGCCCAAGAATAGCAGCTCATGTCAAGGTCTATTTTGACAATCTATTGAAACTTGCATTTCTTAATCACACGGATTACACAAGAACAATATTTGACCACCAGTGGCAGACACATAGAAAGGTTCCTTGCTGGTCATATTTTATTGATCCTGAGTCTAGATGCAGGTCACCGCTTCCACCATATGTGAAGTTTCTCCATACATTAGGATATCCGTTTATATCAGATCCTTACACACTCAAATTATCAATCCAGACTCCTGGGAGCCGCTTATCAACGTTGCTGCCTCACTCTTGCTATCTCTCTTTCGCCCCTCCAGAGCTATTATTTGGCAGGTACCAATCTGATGAACAGGCATGGTCAGACACAATTAAATCTGTGAGCAGTGGAGAAACTGTTAGGATTAGTACCATGGACTGGCTGGGTCAGTCTGAATTTACCACACCCAAAATTTACTGGTCGTCCTTATCTTCTGCAATATCAGAGGTTGTCTTCTCAAAAAATGCAACTGTGAAGTTATTGGTATCATACTGGACACATTTTGTTGAGAGCACCGATCCATACCTCAAGTCTCTCCTCTACTCAAACATCCTCTGTAACTCCTCAAAATTCAATGATTGTTTTGGCAAAGTTGAGATCAGATACTATGTGGTTCCTGGTTACAATGAAACAGGACCGGCACTTTATCGCAACGGAACGAGGACGAAAAATACATATCCTAGTTTTACTAGAGTACAACATGGAAAGTATGCAGTTAGTGATGTTAGAGCACACATAGGAACAAGCAATCTTGGATGGGATTACTTTTATGTAACCTCTGGTGTCAGCTTTGGAACATACAATCCAGCTATTGTTAAGCAGCTTCAAGAAGTGTTTGATGCTGACTGGAATTCTCCTTATACTGTTCCTGTTAAAGCCATACAGGATGGCCCTACATTTTCCAGCTGA 1566 42.72 MKAQTLTVTTIFSALFFFFFFFISQFLPVLSFTRPQCKAWLVQSIPTDMPQLQRVQGLLSTRDVFVWLAGNSTQRLDIIAQYWELLAGPDDSQSGDFGYSNEDLKKFGANKGCDVYSAIEKAADRNVNVRLVSHSGVYPHYGKEAADLASGRPNVQNVTLLLGDWFGSGIVHSKVWISDDKDVYIGSANQDWKSLSQVKELGIYLTGCPRIAAHVKVYFDNLLKLAFLNHTDYTRTIFDHQWQTHRKVPCWSYFIDPESRCRSPLPPYVKFLHTLGYPFISDPYTLKLSIQTPGSRLSTLLPHSCYLSFAPPELLFGRYQSDEQAWSDTIKSVSSGETVRISTMDWLGQSEFTTPKIYWSSLSSAISEVVFSKNATVKLLVSYWTHFVESTDPYLKSLLYSNILCNSSKFNDCFGKVEIRYYVVPGYNETGPALYRNGTRTKNTYPSFTRVQHGKYAVSDVRAHIGTSNLGWDYFYVTSGVSFGTYNPAIVKQLQEVFDADWNSPYTVPVKAIQDGPTFSS 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29846846 29851911 + CePI673135_05g018000.1 Cec05g1800 203603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1800 521 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 167 194 IPR001736 GO:0003824(InterPro)
Cec05g1800 521 CDD PLDc_vPLD3_4_5_like_1 41 208 - -
Cec05g1800 521 SUPERFAMILY Phospholipase D/nuclease 62 225 - -
Cec05g1800 521 SMART pld_4 448 474 IPR001736 GO:0003824(InterPro)
Cec05g1800 521 SMART pld_4 167 194 IPR001736 GO:0003824(InterPro)
Cec05g1800 521 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 448 474 IPR001736 GO:0003824(InterPro)
Cec05g1800 521 Gene3D Endonuclease Chain A 313 507 - -
Cec05g1800 521 Gene3D Endonuclease Chain A 60 226 - -
Cec05g1800 521 PANTHER PHOSPHOLIPASE D - RELATED 22 517 IPR050874 -
Cec05g1800 521 Pfam PLD-like domain 114 222 IPR025202 -
Cec05g1800 521 SUPERFAMILY Phospholipase D/nuclease 306 514 - -
Cec05g1800 521 CDD PLDc_vPLD3_4_5_like_2 306 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1800 K16860 - - csv:101213538 990.719
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g580 . . . Bda03g00100 . . Bma04g00093 . . . . . Car09g00356 . . . Cpe06g00292 . . . . . . . Cla05g01677 Cam05g1792 Cec05g1800 Cco05g1856 Clacu05g1779 Cmu05g1664 Cre05g1794 Cone4ag1746 Cone7ag1665 . . Lsi04g01340 . . . . . . . . Bpe04g00084 . . Sed05g1747 . Cmo09g00411 Cma09g00406 . . . . . Bhi09g03012 Tan01g3556 Cmetu07g0002 . Hepe01g1962 Mch11g0499 . . . . . . . . . . . Cme07g00125
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011125 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31