Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1802 ATGAAGATTACAAGCTTCAGTCTCCCAGCTTCATTTCCCTCCCACGAACACGAAGGATGCGTGCGTCTTTTTGGTATCCCTTCTCCGTACTGTCATTACTCAAAAGCACAGAGAGGTCGTTTCCTCTCTGAAACTGGCGGTTTAATCTCCAAGACCTTGAAACTAATGGGGACATCAGGCGCAAAGGACGATATAGAGATGAATAGTGAGGGCGAAGACTTATCACCTGGAACGGATATGGATACAGATGATGACGATTATTATTCTGAGCCAGTCAACATACATGATCTGGGGGAAGCATTTCTAAATGATTTTTGTAAGAAGTCATCAATGGCATTTTTTAATCAGTACGGCCTTATCAGTCACCAAATCAACTCGTACAATGAGTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTATTTTGGTGAGATTGTAGTTCAGCCAGGATATGACCCCTCTAAGAAAGGAGACGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTGAGGTAACCCTCGATAAGCCAAAGTTCTGGGGTGGTGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGGAAATTAGTTTAGAGGTATATACTCAAAGGTTAGTCAGAAGCGACAAATTTAAAACTGGAAAAGATCAATATGTCGACAAGGAACATGTAACGGGAGGAGAGATCAGGGATATCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTCTGCTGGATGAAGGATGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTGTTGCTCAAGAGCAGAGTTGTTTGAGAAGACTCTGGATTTCTAATATTCAAGGCTGGACTGTGGCATACAGATCAGAAGTTAAGAGAAATAGACTAATTATTAGACTAGTTGAAAATTCCAAGTCTGAAGAACTAAAAAGCAAGGAGAAAGTCCTCAATGTATATTTTTTGTCCACAGAAGTTCCTGTGTGGATTTTATTCTTTGCTCTTGGTGTTTCATCAGACAAAGAAATAGTAGATTTAATCGACTATGGCAGAGATGATCCGACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGACTTTCGAAGAGGTAAAAGAGCACTGAATTTTTTGGACAATGAGGTTAAAAAGACAAGTTTTCCACCTGCTGAAAAAATTGAAGATTGCCTGAACCTATATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTCCTTGGATATATGGTTAAATGTCTTCTGCAAGCCTATACTGGCCGGAGGAAATGTGATAATAGGGATGATTTCCGCAATAAGAGGTTTGAGTTGGCTGGAGAACTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGCATGGAAAAAGCTTTACAAAGGGACCTCTATGGGGATCGTGTAGTGCGCCAAATAGAACACTATTTCGATGCTTCAATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATTCATTTAAGAGGATGGAAAGGATTTCAGGTGTGGTTGCAACTCTTGGCCGTGCTAATCCCTTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACTGGGAAAGTCGGTGATCAAAGATACCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTCCTCTCCACTCCAGATGGTGAAAATTGTGGGCTTATTAAAAATTTGTCCGTCACAGGACTTGTAAGCTTAAACACATCAAAGCCCATAGTTCCCACATTGTTTCGATGTGGAATGGAGAATTTGGTGGATGATACGTTTACTTCTCTTAGTGGGAAGCACAAAATTTTTCTTGATGGGGAATGGGTTGGAGTTTGTGAAGATTCCCTTTCATTTGTAACGAAAGTGAGACGCAAGCGACGAAGGGATCCGTTGCTGCATCAGGTAGAAGTCAAAAGAGATGAACAGCTGAAAGAGGTACGTATATTTTCCGATGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAATAGGATTGATAAGTCGAAGGGAGAAAACTACACTTTTCAATCCCTTTTGGACAAGGGAATAATTGAACTTATTGGAACTGAAGAAGAAGAAGACTGTCGTACAGCTTGGAGTATTAAGCATCTTGCGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCGTTTTTATTAGGTTTAAGCTGCTCACTTGTCCCGTTTGCAAATCATGACCATGCTAGGAGGGCTCTGTTTCAATCCCAGAAGCACTCTAATCAAGCTATTGGATTTTCAACAACCAATTCTAATTTTCGTGTGGATACTTTATCCCACCAGTTACACTATCCACAAAGACCACTTTTTCGTACAATGACTGCTGATTGCCTTGGAACGCCTGGATACCTGTCATCTCACACCGGTATACTACCAAAACCTGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCATCTGGGTTACAACCAAGAAGATTCATTAGTAATGAACAGGGCTTCTCTGGAGCGTGGCATGTTTCGGTCTGAGCATATCCGGAGTTACAAGGCTGAGGTAGATAATAAAGAATCTTCAGAGAAGAGGCGAAAATCTGATGATGTAATAAATTTTGGAAAAACTCAAAGTAAAATTGGAAGAGTTGACAGCTTAGACGAGGATGGCTTCCCTTACATCGGTGCAAATTTGCAGAGTGGGGACATTGTCATTGGTAGATGTGCGGAATCTGGGGCTGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTTGTGCTCTCTTCTAATGACGACGGGAAGAATTATGCTGTTGTATCCCTCAGACAGGTTCGATCTCCTTGTCTTGGGGACAAGTTTTCAAGTATGCATGGACAAAAGGGAGTTCTGGGGTTTTTGGAGTCTCAAGAGAATTTTCCCTTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAATCCACATGCTTTTCCTTCGCGACAGACTCCTGGTCAACTATTGGAAGCAGCTCTCGGGAAAGGGATTGCTGCTGGCGGTTCTCTGAAATATGCGACGCCTTTCTCAACCCCTTCTGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGAAGCGAGAGGGTTTACAATGGCCGAACTGGCGAAATGATGCGATCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTTAAATTTCGCAACACTGGCCCTGTCCACCCTCTCACACGACAACCTGTTGCCGACCGAAAGCGTTTTGGCGGGATCAAGTTCGGAGAGATGGAACGTGATTGTCTTATAGCTCATGGTGCCTCGGCCAACTTGCACGAACGCCTATTTACCCTCAGTGATTCTTCCCAGATGCACATTTGCCAGAAATGCAAGAACGTTGCAAGTGTGATTCAGCGATCGGTGGCTGGTGGTCGTAAGATAAGGGGTCCATATTGTCGGGTTTGCGAGTCGGTCGATGATATTGTGAGGGTAAATGTACCGTATGGAGCCAAGTTGTTGTGCCAGGAGCTATTCAGCATGGGCATCAATCTCAAGTTCGAAACACAGCTGTGTTGA 3753 42.79 MKITSFSLPASFPSHEHEGCVRLFGIPSPYCHYSKAQRGRFLSETGGLISKTLKLMGTSGAKDDIEMNSEGEDLSPGTDMDTDDDDYYSEPVNIHDLGEAFLNDFCKKSSMAFFNQYGLISHQINSYNEFIKSGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGEVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMEISLEVYTQRLVRSDKFKTGKDQYVDKEHVTGGEIRDIFIGRLPVMVNSDLCWMKDEQKRDCEFDHGGYFLIKGAEKIFVAQEQSCLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALNFLDNEVKKTSFPPAEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDRVVRQIEHYFDASIITNGLSRAFSTGAWAHSFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDQRYPHPSHWGRVCFLSTPDGENCGLIKNLSVTGLVSLNTSKPIVPTLFRCGMENLVDDTFTSLSGKHKIFLDGEWVGVCEDSLSFVTKVRRKRRRDPLLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRTAWSIKHLAEDEGTTKYSHCELDMSFLLGLSCSLVPFANHDHARRALFQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDVINFGKTQSKIGRVDSLDEDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29862097 29871482 - CePI673135_05g018020.1 Cec05g1802 203605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1802 1250 Gene3D RNA polymerase alpha subunit dimerisation domain 1134 1248 - -
Cec05g1802 1250 Gene3D - 777 1133 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 FunFam DNA-directed RNA polymerase subunit beta 1134 1248 - -
Cec05g1802 1250 Pfam RNA polymerase beta subunit 118 506 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 Gene3D RNA polymerase Rpb2, domain 2 300 462 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 106 1247 - -
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 6 776 1147 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 FunFam DNA-directed RNA polymerase subunit beta 111 295 - -
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 3 551 610 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 FunFam DNA-directed RNA polymerase subunit beta 878 996 - -
Cec05g1802 1250 FunFam DNA-directed RNA polymerase subunit beta 462 650 - -
Cec05g1802 1250 CDD RNA_pol_B_RPB2 119 1246 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 2 338 472 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 Gene3D - 463 640 - -
Cec05g1802 1250 Gene3D - 111 294 - -
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 7 1149 1247 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 5 723 766 IPR007647 GO:0006351(InterPro)
Cec05g1802 1250 ProSitePatterns RNA polymerases beta chain signature. 1000 1012 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cec05g1802 1250 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 111 1246 IPR015712 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Cec05g1802 1250 Gene3D - 807 996 IPR014724 GO:0003899(InterPro)
Cec05g1802 1250 MobiDBLite consensus disorder prediction 61 83 - -
Cec05g1802 1250 Pfam RNA polymerase Rpb2, domain 4 647 708 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1802 K16252 - - csv:101212812 2266.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1802 Cec-Chr5:29862097 Cec07g0030 Cec-Chr7:335170 1.20E-136 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32