Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1807 ATGGCTTTATTTCGCAAATTCTTTTATCGGAAGCCACCGGACGGGCTTTTAGAGATATCCGAAAGGGTTTATGTTTTCGACTGTTGCTTTACAACGGAGGTTTTGGAAGAAGACGAATACAAGGTCTATATTGGAGGGATTGTTGGGCAACTTCGTGAGAGTCTCACTGACGCTTCATTCATGGTGTTCAATTTCCGAGAAGGGGAGAATCATAGCCTCGTTACTAATATATTATCTGTATATGATATGACTGTCATGGACTATCCTCGACATTATGAAGGCTGTCCTCTACTCACTATGGAGATGATCCACCACTTTTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGCCAACAGAATGTACTTTTGATGCACTGTGAAAGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCGCGGGAACTTTTGCAGTTGATGTCACCTCTTAATCCATTGCCTTCACAGTTGAGGTATCTTCAATATGTATCAAGAAGAAATGTGGCCTCAGAATGGCCTCCTCTTGACAGGGCTCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAGGGTGGTTGCCGCCCAATATTTAGAATATACGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGGCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAACACAGCATTTATAAGGTCAAATATTTTAATGCTTAACCGTGATGACATTGATATTTTATGGCACGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTTTCAGAGATGGATGCTTCCGCATCACTTATTTCAGTTGAGTTGCCAAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCATTTGCTAGAGTTCAAGAGATCTTCAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCAAATTTACTTCAAGAGAAACTGGTTAGTTCCGGCTCTTTAGATAGAAACCAGTTGCTCGACTTATCTGTTGAAAAACTAATCTTGGAATCAGAGACATCTGAAGACAATATTGGAAGTCCCCGATTGAAGATACAGACAAAAAAATCTCAGCCTTCTTCCGAACTATCTCAGGCTGCAGGTTCAGAGATATCAAAGATTGATCCCTCAGAATTGCAGGTTGCTCTCCAACTACCACCTCAGTCTAAAATCATCACCCAAAGAATACCTCAACCTTCATTGTCTACGCCAGCCTCCTTCCGTAGTTCTATGCAAGGTTCACCTCGCCCTATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACAAGATCATTCCAATTTTAGTGGTAAAGAAGTCATACATCCAGCGACAATATCTTCACCATCATCTGCTTTCTTGAGTTCAAGTGGTCTAGATTCACTTAAAGATATTCAACCTTGTAAGCTTCCTATTTTGCCTCTCCCGCTAGCATTAGAGCCAAGATCTACATCAGAAAATTCTTCGACCACTGCGTCCACTTCAACCACTCCGGATCCATTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCAATTTCTCAACCTCCTCAAGCCACATCACGGGTGAGAAGTCAATTATCACCGTCTTCATTACAACCAACTTCTACCTCTTTTCCTGAGGAGTCCCCACCCTCCTTCAATGAGAGCGAAGCTTTAAGAACCTCTTCCTCTTTAACTTCTCCGTCTTCTAGTAGGGAAAACAGTATTTTCCCATCCTCTCCACAACCTCCTTCTACAACACTACTGTTATCCTCTACAAAGACATCAATTCCATCTGTTCCTCAATTTTCTTCGTCTGATGATCGTCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGACGAGTGTCTCTCCTCCTCCTCCTCCTCCTCCATGTTGTAGCCCTAACTTGGGCGCTAGTGTTGCCTCGCCAACACCAGTGCCCCCACCCCCACCTCCACCTCCTTCATGGAAGGATGCTACAGACACATTCATGCTTGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCTCCATCTTCTTTCAGTTCAACATCTACTTGTGACTCTAGTATCACGCCTTTAGGGCCACCTCCACCACCACCTCCTCCTAGTCATGCACCACAAGATTTTGCCACTGTAGTTAGGAACTTGATGGCTGTATCTGGCCCTCCACCTCCCCCACCTCCCCCACCTCCCCCATCTCATTCTTCTCTAGATCCTAATACTGTATCTTCAGTACCGCCGCCGCCACCCCCTCCTAGTCTTGCACCAAATGTTTCTACAACAACTGTTAACTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGCAAATTCTGGTCCCACCTTATGTTCAGGTGCTGTAACGTCGGCTCCCCCTGCTCCGCCTCCTCCAGGTTTCTCAATGAAGGATTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCAGTGGTAATAAACTCTCAAATGTCAATGGTACTTCCTCACAGTCTCACGTTGGCATTAATAACAGCAACATACCTTCTGTTCCTGGACCACCTTCCAGCGCTCTATTCAATGCCAAGGGAAGGGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCATATCATTGGTTAAAATTAACGAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCGGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAACTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACAAAGGAAGAAATGGAATTACTTAAGGGGTACAATGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTTTAGAGTTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGATTGCAGGCCTCTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGATCAGAAGTTCGGTAAAGTTGAAAAGGGTAATGCAAACGATCCTTTCATTGGGTAATGCTTTGAACCACGGAACGGCCAGAGGTTCTGCTATTGGATTTCGACTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTAGATTTTCCGAAGGATCTTGTTAGTTTGGAAGCTTCTACAAAGATACAACTGAAATACTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAAGTCGTTCAGGAATTGGCTAATTCAGAGAACGATGGGCTCGTTTCAGGAACTTTTTGCCGGACTTTAAAAGACTTTCTTTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCATTGGCTCTGTATTTCGGCGAAGATCCAGCACGTTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTCAATTTCGTGAGGATGTTTATACGAGCGCATGAAGAAAACTGTAAGCAACTTGATTATGAAAAGAAGAAAGCACAGAAGGAAGCTGCAGAAAAGGAGAAGTTGAAACTCAATACCACAAAGGAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4137 43.68 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDEYKVYIGGIVGQLRESLTDASFMVFNFREGENHSLVTNILSVYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDASASLISVELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLDRNQLLDLSVEKLILESETSEDNIGSPRLKIQTKKSQPSSELSQAAGSEISKIDPSELQVALQLPPQSKIITQRIPQPSLSTPASFRSSMQGSPRPILRYHSAPSALGITALLQDHSNFSGKEVIHPATISSPSSAFLSSSGLDSLKDIQPCKLPILPLPLALEPRSTSENSSTTASTSTTPDPLSLHQLSLKPIKSSISQPPQATSRVRSQLSPSSLQPTSTSFPEESPPSFNESEALRTSSSLTSPSSSRENSIFPSSPQPPSTTLLLSSTKTSIPSVPQFSSSDDRLVSSQSPKKNLTSVSPPPPPPPCCSPNLGASVASPTPVPPPPPPPPSWKDATDTFMLDPPPPPPAPPLPPSSFSSTSTCDSSITPLGPPPPPPPPSHAPQDFATVVRNLMAVSGPPPPPPPPPPPSHSSLDPNTVSSVPPPPPPPSLAPNVSTTTVNLTHVSGPPPPPPPPFANSGPTLCSGAVTSAPPAPPPPGFSMKDSATHAPPAPPPPGLSGNKLSNVNGTSSQSHVGINNSNIPSVPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDSALDVDQVENLIKFCPTKEEMELLKGYNGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQASDLRNSLNTINSASEEIRSSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELANSENDGLVSGTFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFIRAHEENCKQLDYEKKKAQKEAAEKEKLKLNTTKEESGFLMQTPT 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29912873 29926073 + CePI673135_05g018070.1 Cec05g1807 203610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1807 1378 Gene3D Formin, FH2 domain 952 1344 IPR042201 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 571 706 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 911 939 - -
Cec05g1807 1378 Pfam Formin Homology 2 Domain 960 1333 IPR015425 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 1012 1030 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 953 967 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 569 973 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 751 766 - -
Cec05g1807 1378 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cec05g1807 1378 Gene3D - 196 341 - -
Cec05g1807 1378 SUPERFAMILY Formin homology 2 domain (FH2 domain) 884 1353 - -
Cec05g1807 1378 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cec05g1807 1378 Coils Coil 1334 1369 - -
Cec05g1807 1378 ProSiteProfiles Formin homology-2 (FH2) domain profile. 958 1359 IPR015425 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 1012 1034 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 430 454 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 856 870 - -
Cec05g1807 1378 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 707 721 - -
Cec05g1807 1378 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 807 844 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 779 794 - -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 1355 1378 - -
Cec05g1807 1378 SMART it6_source 550 1378 IPR015425 -
Cec05g1807 1378 PANTHER FORMIN-J 1 1359 IPR051144 -
Cec05g1807 1378 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cec05g1807 1378 SMART PTEN_C2_2 197 337 IPR014020 -
Cec05g1807 1378 MobiDBLite consensus disorder prediction 728 744 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1807 K28090 - - csv:101214019 2102.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1748 Cec-Chr1:32075253 Cec05g1807 Cec-Chr5:29912873 7.60E-251 dispersed
Cec05g1807 Cec-Chr5:29912873 Cec06g1796 Cec-Chr6:31425987 3.80E-264 dispersed
Cec07g0276 Cec-Chr7:2713591 Cec05g1807 Cec-Chr5:29912873 6.90E-263 transposed
Cec05g1807 Cec-Chr5:29912873 Cec06g1416 Cec-Chr6:27698588 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec09g1024 . 87 351 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 3.5e-102 368.6
Cec06g2025 . 201 1098 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1098.2
Cec06g0587 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cec09g2184 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cec05g2366 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 1.1e-114 409.8
Cec07g0550 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 6.2e-97 350.9
Cec10g1431 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 2.5e-201 698.4
Cec02g1896 . 91 292 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cec09g1099 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cec03g1081 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 1.6e-54 209.9
Cec10g0247 . 83 415 Protein tyrosine phosphatase (PTP) family AT2G35680 55.2 7.2e-100 360.9
Cec11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.3e-80 297.0
Cec11g0207 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cec10g0247 . 119 294 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Cec02g1896 . 125 293 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cec09g1099 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cec03g1081 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cec03g1081 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.6 3.8e-80 294.7
Cec02g1896 . 116 288 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.5e-57 218.0
Cec07g0343 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec02g0662 . 33 612 Protein tyrosine phosphatase (PTP) family AT3G19420 66.7 1.9e-220 762.3
Cec04g1397 . 55 630 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 1.0e-197 686.8
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec02g2310 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 6.7e-69 257.7
Cec10g0184 . 22 308 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 3.2e-107 385.2
Cec04g0863 . 1 721 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 8.2e-281 963.0
Cec04g0863 . 5 721 Protein tyrosine phosphatase (PTP) family AT5G01290 61.3 1.2e-252 869.4
Cec04g0863 . 86 721 Protein tyrosine phosphatase (PTP) family AT5G28210 52.4 5.8e-180 627.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42