Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1809 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGATTGCTAGGGAAGGGAACTTTTGCTAAGGTTTATTATGGAAAAGAATTGGAATCCGGTGAAAGTGTAGCGATTAAGGTTTTAAATAAGGACCATGTCAAGAAGGAAGGGATGATGGAGCAGATCCAGCGCGAGATTTCTGTTATGCGTCTTGTTCGTCATCCGAACATTGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGTGGTGAACTTTTTGCCAAAGTCGCTAGAGGAAAACTGAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCAGTTGATTACTGTCACAGCCGTGGAGTCTCTCATCGCGATTTGAAGCCGGAGAATCTTTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCTTTACCGGAACAGCTTCGGAACGACGGTCTTCTCCACACGCAGTGCGGTACTCCGGCTTACGTCGCACCCGAAGTACTAAGAAGAAAGGGCTACGATGGAGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTGTATGTTTTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACTATGTATAAGAAAGTTTTCAAGGCTGAATTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTTTGATTTCGAAAATCCTCGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGAAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCAGCGAAAGCAGAGGATTCCGATGCCGAGAGTCCAAAACTATCGACGCCAAAATTCTTTAATGCGTTCGAATTAATATCGTCGATGTCGTCCGGATTCGATCTGTCGAGTTTATTCGAGAACAAAAGGAAGACAGGATCCATGTTCACATCGCGATGCTCAGTATCGACGATAATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTAAAAGATTTCAAGGTCCGGCTGCAAGGTCCGGCGGAGGGGCGAAAAGGAATGCTGTCTGTGACGGCGGAGGTGTTCGAAATAGCGCCGGAAGTTGCGATAGTGGAATTCTCAAAGTCGTCCGGCGATACTCTGGAATATTCGAAGTTCTGTGAAGAAGACGTCCGGCCGGCGCTGAAAGACATCGTTTGGACGTGGCAAGGTGAATGTGTCCCTAACGTTGACGGACGTCACGGCCAATTTGACGGCGACGGATTTTTATGA 1332 47.07 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDHVKKEGMMEQIQREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKAEDSDAESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKVRLQGPAEGRKGMLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGECVPNVDGRHGQFDGDGFL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 29949201 29950532 - CePI673135_05g018090.1 Cec05g1809 203612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1809 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Cec05g1809 443 FunFam Non-specific serine/threonine protein kinase 4 297 - -
Cec05g1809 443 CDD CIPK_C 302 416 - -
Cec05g1809 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Cec05g1809 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1809 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec05g1809 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1809 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cec05g1809 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Cec05g1809 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cec05g1809 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1809 443 Coils Coil 39 59 - -
Cec05g1809 443 CDD STKc_SnRK3 10 264 - -
Cec05g1809 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1809 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Cec05g1809 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Cec05g1809 443 SUPERFAMILY Protein kinase-like (PK-like) 7 281 IPR011009 -
Cec05g1809 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1809 Cec-Chr5:29949201 Cec08g1221 Cec-Chr8:24123399 8.00E-107 dispersed
Cec02g2220 Cec-Chr2:39610205 Cec05g1809 Cec-Chr5:29949201 1.20E-35 transposed
Cec10g1304 Cec-Chr10:27267368 Cec05g1809 Cec-Chr5:29949201 2.70E-176 transposed
Cec05g1809 Cec-Chr5:29949201 Cec06g1412 Cec-Chr6:27645482 5.50E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72019 PF00069 Pkinase 1.30E-74 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1809 - - - 0.0