Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1832 ATGGCGTATCACAATCACCTCTCACAAGATCTTCCTCTTCACTTCTCTGACCACCACCAAAATCAGCCTCTCTCTGATACTTCTCTCCGTACCATTTTGCCGGACCAACTTCCCGGCGCCCACTCCTCACCGGACCCCAAGTCTCACCAACCCCATCACCACCATCACCATCATCCGCTTCAGACGGCACCGAATTGGCTCAACAACGCACTTCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGACACCACCGCCACCGCCGCCGCTGCGGCCAATACTAATTTCCTTAACCTTCACACCACTGCATCCGATTCCACCGTTTCTCACTCCTCTAACCAATGGCTTTCCCGCCCGATCCTCCACCGTAACCACAGCGATGTCATCGACGATGTCGCCGCTGCCGCTGCCGGTGATGCTATGATCGGTGCTGCCACTGCTGCGCTCTCTCACGATTCTGGCGACATGAAGAACGATGCTAATAGCGGGGATGGATTGAACAAGAGCGAGGGTATGTTGATGGAAACTGGTGCCGGCGGTGAAGGGGTTTTGAATTGGCAACATGCTCGTTATAAAGCTGAGATTCTTGCTCATCCTCTTTACGAGCAGCTTCTTTCCGCTCATGTCGCTTGCCTTCGCATCGCAACGCCGGTCGATCAATTACCGAGGATCGATGCACAGCTCGCTCAGTCGCAGAATGTCGTCGCTAAGTACTCCGCCTTGGGCCACTCCGCTCCGCCGTCCATGGTTGGTGATGATAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTTTTGCTTTGTTCATTTAAAGAACAACTTCAACAACATGTTCGAGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCAGGTGAAGGTACAGGAGCAACAATGTCGGACGACGACGACGACCAAGTCGACAGCGATGCAAATCTGTTCGATGGAAGTTTAGAGGGTCCAGACACCATGGGGTTCGGCCCTCTTATTCCCACAGAGAGCGAGAGATCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAATTAAAAGCGGGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCTAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAACCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAAGTTCAACAAACTTGAAAAGCAAACGCAAAAGAAGTAATGCAGGTGAAAACAGCAGCGACCGTTTCAAATGA 1407 49.82 MAYHNHLSQDLPLHFSDHHQNQPLSDTSLRTILPDQLPGAHSSPDPKSHQPHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTTATAAAAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVAAAAAGDAMIGAATAALSHDSGDMKNDANSGDGLNKSEGMLMETGAGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPPSMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSNAGENSSDRFK 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30339214 30343484 + CePI673135_05g018320.1 Cec05g1832 203635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1832 468 MobiDBLite consensus disorder prediction 301 320 - -
Cec05g1832 468 Pfam ELK domain 359 380 IPR005539 GO:0003677(InterPro)
Cec05g1832 468 SMART KNOX2_2 247 302 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1832 468 FunFam homeobox protein knotted-1-like 3 isoform X1 380 441 - -
Cec05g1832 468 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1832 468 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 450 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g1832 468 MobiDBLite consensus disorder prediction 436 453 - -
Cec05g1832 468 SMART HOX_1 381 446 IPR001356 GO:0003677(InterPro)
Cec05g1832 468 SMART KNOX1_2 190 234 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1832 468 Pfam KNOX1 domain 192 233 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1832 468 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677(InterPro)
Cec05g1832 468 MobiDBLite consensus disorder prediction 436 468 - -
Cec05g1832 468 SMART ELK_2 359 380 IPR005539 GO:0003677(InterPro)
Cec05g1832 468 CDD homeodomain 382 443 IPR001356 GO:0003677(InterPro)
Cec05g1832 468 MobiDBLite consensus disorder prediction 33 62 - -
Cec05g1832 468 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
Cec05g1832 468 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec05g1832 468 Gene3D - 380 441 - -
Cec05g1832 468 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677(InterPro)
Cec05g1832 468 MobiDBLite consensus disorder prediction 454 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1832 Cec-Chr5:30339214 Cec05g1945 Cec-Chr5:31502954 4.10E-29 dispersed
Cec01g0315 Cec-Chr1:3219474 Cec05g1832 Cec-Chr5:30339214 3.00E-105 transposed
Cec05g1832 Cec-Chr5:30339214 Cec08g1397 Cec-Chr8:25771491 2.70E-182 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29607 PF03791 KNOX2 1.90E-21 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1832 - - - 0.0