Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1847 ATGAAGAAAATCCGATCCACTCTATGCAGAAAGAGACGCAAAACCAAAGAAAAGAACCAATTCTTCTTCTTCTTCTTCTTCCAACGTCCAAATTCCGATCATGGAACAAATCTTCACTCACACATTCTTCTCTTCCGCCATTTCTTCATTGCCTTCCCGTCCGCTGATGCCGTTTGCCGCCGTACACCTTTGCTACTAGCTTCTTTCTTCTTTGTTTCCTTTGGCTTTCATTTTCTCAGGTCTCTCTCCGAATCTTTCCCTATGTCGTTCTTTTCTGGTATCTTCCTCGGCGTTGTTGTCGGAGTCCTACTCATTATCGCTCTTGCTCGCGCCGGAAATGTTCGCGCCAAGCATCGCTCCGATTTGGCTACGACTATTGCGGCATTTGCAAGGATGACGGCACAGGATTCGAGAAAAATTCTTCCCAAGGAGTTTTATCCGTCGTGGGTCGTATTTACGCAGCGACAGAAGTTAACTTGGCTCAATCTTCAGCTTGATAAAATCTGGCCATATGTTGACGCGGCAGCATCGGAACTGATAAGGAGCAATGTGGAGCCGGTTCTAGAACAATTTCGACCGGCGATATTATCTTCTTTGAAGTTCTCAAAGTTGACCCTGGGTACTGTCGCTCCACATTTTACAGGAATTGCTGTACTTGAAGACGAGCCTGAATCCGGTGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAAAAGAAAAATCTTGATTTTAAACTTAAGATTTCTGGAGGAGATATATCATCTATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATTCGAGATGCTATTGAAGGTACTATAACGTGGCCTGTTCGGATGATTGTGCCCATCATAGCAGGAGATTATAGCGATTTAGAGGCAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGCTGTTTTTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAATTTTTGACGATGAAGGAGTTCAGGCCTCTGAACTAATTGGCTGTGCTCAAGTAGCACTAAAAGACCTCGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGACATCCAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTTGGCACTGATCAGAGCCTCTATATAAACCCATTTAACCCAGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAAACGGCTCCGAATGGCTCAGAAGATGCAGATTCTGGAAAACCAAGCTCCCCAAAGAAGAGGGATGTGATTGTAAGAGGAGTGTTATCTGTGACAGTAATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCTGACCCTTACGTTGTTCTCATTATGAAGAAATCCGAGACCAAATTTAAAACCAGGGTTGTACATGACACCCTGAATCCTGTCTGGAATCAAACATTCGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATGGTAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACATTGACAAGAGCGATATTGGAGGGGGAAATTCAGGACTGTTTTCCACTGGAAGGAGCCAAATCAGGACGGGTTTATCTGCATCTCAAATGGGCAGCTCAGCCAATTTTCCGAGATATTTGA 1971 42.82 MKKIRSTLCRKRRKTKEKNQFFFFFFFQRPNSDHGTNLHSHILLFRHFFIAFPSADAVCRRTPLLLASFFFVSFGFHFLRSLSESFPMSFFSGIFLGVVVGVLLIIALARAGNVRAKHRSDLATTIAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLTWLNLQLDKIWPYVDAAASELIRSNVEPVLEQFRPAILSSLKFSKLTLGTVAPHFTGIAVLEDEPESGGITLELEMQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKNLDFKLKISGGDISSIPGVSDAIEETIRDAIEGTITWPVRMIVPIIAGDYSDLEAKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFLRPLKERMKTSKTINNQLNPIWNEHFDFIVEDASTQHLTIRIFDDEGVQASELIGCAQVALKDLEPGKVKDVWLKLVKDLDIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKTAPNGSEDADSGKPSSPKKRDVIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETKFKTRVVHDTLNPVWNQTFDFLVEDALHDMLMVEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDCFPLEGAKSGRVYLHLKWAAQPIFRDI 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30524342 30528290 + CePI673135_05g018470.1 Cec05g1847 203650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1847 656 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 530 647 IPR035892 -
Cec05g1847 656 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 154 338 IPR031468 GO:0008289(InterPro)
Cec05g1847 656 Gene3D C2 domain 347 487 IPR035892 -
Cec05g1847 656 ProSiteProfiles C2 domain profile. 514 631 IPR000008 -
Cec05g1847 656 SMART C2_3c 352 452 IPR000008 -
Cec05g1847 656 SMART C2_3c 532 630 IPR000008 -
Cec05g1847 656 FunFam Extended synaptotagmin-2 512 651 - -
Cec05g1847 656 FunFam Plant synaptotagmin 346 487 - -
Cec05g1847 656 Pfam C2 domain 531 628 IPR000008 -
Cec05g1847 656 Pfam C2 domain 351 455 IPR000008 -
Cec05g1847 656 CDD C2 533 633 - -
Cec05g1847 656 Gene3D C2 domain 520 649 IPR035892 -
Cec05g1847 656 PRINTS C2 domain signature 574 587 IPR000008 -
Cec05g1847 656 PRINTS C2 domain signature 548 560 IPR000008 -
Cec05g1847 656 PRINTS C2 domain signature 596 604 IPR000008 -
Cec05g1847 656 ProSiteProfiles C2 domain profile. 332 453 IPR000008 -
Cec05g1847 656 CDD C2 353 455 - -
Cec05g1847 656 CDD SMP_SYT 147 337 - -
Cec05g1847 656 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 349 480 IPR035892 -
Cec05g1847 656 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 157 338 IPR039010 -
Cec05g1847 656 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 81 650 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1847 K28063 - - csv:101210249 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1847 Cec-Chr5:30524342 Cec06g0029 Cec-Chr6:326973 8.00E-71 dispersed
Cec11g0341 Cec-Chr11:3700031 Cec05g1847 Cec-Chr5:30524342 8.70E-226 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70