Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1858 ATGGCTGTCGACGGCATTTGCAGACTTGACGTCGTTGACTTTCCTGCCCCGCCAACGACCGTCGACAAGCATCGCAGATCGTTCTCGCTGCTTTCGTCTCCTTTGATGATCGTTGGGCTCTCCAGGAAGTATGTTTTGTATCGCCAGCTTCCGCATCAGCCTCTCATGCTCTCTGTCCTTAAATTGGACGGCTCTTGTTTCGATATTCAAGTTAAGAGATCTGCTACTGTTGCTGAATTAAAGGGGGCAGTGGAGTCGGTCTTCAGCCACATGCCAGAGAATGGACCAGGAAAGATTTCATGGCTCCATGTGTGGTGGCATTTCTGCTTATGCTATGCTGGTCAAAAGTTGCTTGATGATGCGGACTACATTGCAAATTTTGGCATCAAGGATGGTGATCAGCTTCAGTTTGTCCGGCATGTAACAACTGGCTACAATGTTATAAGAAAACAGTCAAAGAAATGCCTGGTTTCCTCAAAACTGCTCAGTAGGATATCATCTCGGTCAAAAAGCCACAAGCAAAATGAACAGGAAGATATGGAAAGATATAACTGCAACGATATAGAGAGTGGAAGGTTTCAACATCATGGCAACAATGAGCTCTTCGTCAACCATGAGCCAAAGATGGTAGTCTTTTTGGGAGGATGGTTTTCTCACACCAAGTTGGCATCCGCAGGAAAGATGAGCATCAGTAGCCTGATTCGTCCATCGGGATCCCGTCCTAGCCTGGTGCGTGGTTTTAAGAATTTAATACAATTATGCCGTGAGAAAAGACATTATGAGAAAGTGAATAAAAAGAAGAGATCCATCATAGGAAGCTAA 822 45.13 MAVDGICRLDVVDFPAPPTTVDKHRRSFSLLSSPLMIVGLSRKYVLYRQLPHQPLMLSVLKLDGSCFDIQVKRSATVAELKGAVESVFSHMPENGPGKISWLHVWWHFCLCYAGQKLLDDADYIANFGIKDGDQLQFVRHVTTGYNVIRKQSKKCLVSSKLLSRISSRSKSHKQNEQEDMERYNCNDIESGRFQHHGNNELFVNHEPKMVVFLGGWFSHTKLASAGKMSISSLIRPSGSRPSLVRGFKNLIQLCREKRHYEKVNKKKRSIIGS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30632815 30635466 - CePI673135_05g018580.1 Cec05g1858 203661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1858 273 CDD Ubl_SNRNP25 55 140 IPR040610 -
Cec05g1858 273 Gene3D - 51 146 - -
Cec05g1858 273 SUPERFAMILY Ubiquitin-like 51 144 IPR029071 -
Cec05g1858 273 Pfam Ubiquitin-like domain 56 141 IPR040610 -
Cec05g1858 273 ProSiteProfiles Ubiquitin domain profile. 55 144 IPR000626 GO:0005515(InterPro)
Cec05g1858 273 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 18 261 IPR039690 GO:0000398(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1858 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1337 Cec-Chr7:28968675 Cec05g1858 Cec-Chr5:30632815 1.80E-28 transposed
Cec05g1858 Cec-Chr5:30632815 Cec06g1310 Cec-Chr6:26357334 7.30E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g493 . . . . . . . . . . Cma01g01506 . Car09g00397 . . . Cpe06g00334 . . . . . . . Cla05g01733 Cam05g1846 Cec05g1858 Cco05g1918 Clacu05g1834 Cmu05g1717 Cre05g1848 Cone4ag1781 . . . . Csa03g04329 Chy04g00372 . . . . . . . . . Sed13g2019 . Cmo09g00460 . . . . . Cpe02g00448 Bhi09g02232 Tan01g3635 Cmetu04g2649 . Hepe01g2015 Mch11g0551 . . . . . . . . . . . Cme04g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013027 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28