Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1862 ATGCCCCCAAGACCAGGTCGTAGGTCATTTGAGTGTGTAAGGAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGTTCTCTTATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGCTGTGCCACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTTGTTCTTAAAACTGAAGAGATTTTGTATTCTAAAGCTGACTCTGAGGCTGAATACATGGATATTACTACACTGTGGGCCCGAATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGACGCCGAAACTGGGGAGTTTCTTCATCCTTGTATTGAAGCTGCTCTCCATTTGGGTTGCACGTCGAGAAGATCGTCGAAGAGTAACCAAGTATGCTTTGCAAGCACTAGGAGTTTTGGGAAAATCTCTCCAGGGTTTCAAGGCTCTCAAATGAACTGGATTGATAACAATGGCTTGTTTCTTATGTCCAATAATTCTAAATTTGGATTTGGGTTTGTGACTACTCAAGATGTGACAATGTTTTTGCTAGCTATCATCCACACAAGCAGTTTAAGAGTAGTTTGGTCTGCAAATAGGGCCTTCCCCGTTGCTAATTCTGATGAGTTTACATTTGATGAGAAGGGAAATGCAATGTTGAAGAAAGGTTCTGCTGTTGTTTGGTCTACAAATTCCAGTGATAAAGGGGTTTCTGCCTTGGAGTTGCAAAACTCGGGAAATTTGGTTTTACGAGCGAATGATAGCAACGGTGGAATAGTTTGGCAGAGTTTTAGCCATCCAACTGATACTCTTTTATCAGGGCAGGATTTTGTTGAAGGAATGAGACTTGTGAGTGATCTTAGCAATAATAACTTGAGCTATTACCTTCACATGAAGTCTGGTGATATGACTCTCTCAGCAGGCTTCCAATCCCCACAGACTTACTGGTCTATGGCTAAGGAGAATCGTAAAACCGTTAATAAAAACGGCGGGGCAGTCTCCTCAGCGACTCTTGATGCGAATTCTTGGAAGTTCTACGATCGAAGCAAAGTCTTGCTATGGCAATTCATCTTCTCGAATAAAGCCAATGAAAATGCTACTTGGATAGCAGTTTTAGGAGATGATGGTTTCGTGTCTTTTTATAATCTTCAAGATTCTAGTGTGGCTTCGACTACTAGGATACCTGAAGACTCTTGTAGCACACCGGAGCCGTGTGGCCCGTATTTTATATGTTATAGTGAGAATCGATGTCAATGCCCTTCAGTTCTTAGCACAAATTCGAATTGCCAACCTGGGATTGTCTCTCCTTGTGATCAATCGAATGGAAGTATAGAGCTTGTAAATGCAGGGACTGGGGTCAAATATTTTGCACTTGGATTCCTACCATCCGCCTCAACGACTGATTTAAATGGTTGCAAAAACTCTTGCATGAGCAACTGTTCTTGCCGTGCATTGTTCTTCGAAAGCCGAACAGGGAACTGCTTCTTGTTGGATGATGTAGGTAGCTTTCAAAACTCCAATGAGGACACGGACTTTGTCTCATACATTAAGGTCTTGAACAACGGAGGCGATGGCGACAACAATGGTGGGAGTAGAAATGGTGGAATGAACTCTCATATTGTTGCGATCATCATTGTTTTTACCATGTTCATCATTTGTGGTCTAGTTTATTTGGCATTTCGTTACTACAGGAAAAAGAAAAAACTGCCAGGAACTCCACAAGAGACTTCCGAGGATGATAACTTCTTGGATGGTTTGACAGGGGCGCCCATTCGTTATAGTTACGACGAACTTCAAACTGCAACCAATAATTTCTCTATAAAGCTTGGTCAAGGAGGATTTGGCTCAGTATATCAAGGAGTTCTACCTGATGGAACTCAGGTTGCTGTGAAGAAATTGGAAGCAACCGGTCAGGGGAAGAAGGAGTTTCGAGCTGAAGTGAGCATAATTGGTAGTATCCATCATGTTCACTTGGTCAGGCTCAAGGGCTATTGTGCCGAAGGATCACACAAGCTTCTTGCTTATGAATACATGGGAAATGGGTCTTTGGACAAATGGATATTTAGGAAGAATAAAGAAGATTTTTTGTTAGATTGGAATACAAGATTCAATATTGCATTAGGAACAGCTAAAGGACTAGCTTACCTCCATGAAGATTGTGATGTAAAGATTATTCATTGTGACATCAAACCCGAAAATGTGCTTCTCGACGAAAAGTTCCTTGCAAAAGTATCAGACTTCGGCCTTGCGAAGCTAATGACACGCGAGCAGAGCCATGTCTTTACGACACTAAGAGGAACTCGAGGGTATCTTGCACCAGAGTGGATCACAAACTATGCCATTTCAGAGAAGAGTGACGTGTATAGCTACGGGATGGTGTTGCTCGAGATAATTGGAGGAAGAAAAAACTTTGACTCAACAGAAACTACAGAAAAATGCCACTTCCCATCCTATGCTTTTAAAATGATGGAAGAAGGAAGACTCGAAAACATCATTGACTCGAATTTGGTAGTAAACGATGGTGATGAGAGAGTTTCTACAGCCATTAAAGTTGCATTGTGGTGCATACAAGAAGATATGCACCTTAGGCCACCAATGACTAGAGTAGTCCAAATGCTCGAAGGCCTTTGTGCCGTTCCTCCGCCTCCAACTTCCTCCCTGCTCGGTTCTCGCTTATTTTCAAGTTTCTTCAAATCAATCAGTGAGGGAGGAACCTCTTCCGGACCATCGGACTGCAACAGCGATGCGTATCTTTCGGCCATGAAGCTCTCCGGGCCAAGATGA 2775 42.49 MPPRPGRRSFECVRRAWHSERHQPIRGSLIQEIFRVVSEVHCCATKKNKEWQEKLPIVVLKTEEILYSKADSEAEYMDITTLWARINEAINTIIRLDKDAETGEFLHPCIEAALHLGCTSRRSSKSNQVCFASTRSFGKISPGFQGSQMNWIDNNGLFLMSNNSKFGFGFVTTQDVTMFLLAIIHTSSLRVVWSANRAFPVANSDEFTFDEKGNAMLKKGSAVVWSTNSSDKGVSALELQNSGNLVLRANDSNGGIVWQSFSHPTDTLLSGQDFVEGMRLVSDLSNNNLSYYLHMKSGDMTLSAGFQSPQTYWSMAKENRKTVNKNGGAVSSATLDANSWKFYDRSKVLLWQFIFSNKANENATWIAVLGDDGFVSFYNLQDSSVASTTRIPEDSCSTPEPCGPYFICYSENRCQCPSVLSTNSNCQPGIVSPCDQSNGSIELVNAGTGVKYFALGFLPSASTTDLNGCKNSCMSNCSCRALFFESRTGNCFLLDDVGSFQNSNEDTDFVSYIKVLNNGGDGDNNGGSRNGGMNSHIVAIIIVFTMFIICGLVYLAFRYYRKKKKLPGTPQETSEDDNFLDGLTGAPIRYSYDELQTATNNFSIKLGQGGFGSVYQGVLPDGTQVAVKKLEATGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGSHKLLAYEYMGNGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDEKFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNFDSTETTEKCHFPSYAFKMMEEGRLENIIDSNLVVNDGDERVSTAIKVALWCIQEDMHLRPPMTRVVQMLEGLCAVPPPPTSSLLGSRLFSSFFKSISEGGTSSGPSDCNSDAYLSAMKLSGPR 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30685855 30695290 + CePI673135_05g018620.1 Cec05g1862 203665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1862 924 ProSiteProfiles Protein kinase domain profile. 600 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1862 924 SUPERFAMILY Protein kinase-like (PK-like) 584 871 IPR011009 -
Cec05g1862 924 SMART blect_4 150 264 IPR001480 -
Cec05g1862 924 Gene3D - 150 263 IPR036426 -
Cec05g1862 924 ProSitePatterns Protein kinases ATP-binding region signature. 606 629 IPR017441 GO:0005524(InterPro)
Cec05g1862 924 PIRSF SRK 124 919 IPR024171 GO:0004674(InterPro)
Cec05g1862 924 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 134 882 IPR051343 -
Cec05g1862 924 CDD PAN_AP_plant 434 515 - -
Cec05g1862 924 SUPERFAMILY alpha-D-mannose-specific plant lectins 189 315 IPR036426 -
Cec05g1862 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec05g1862 924 Pfam Protein kinase domain 605 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1862 924 CDD B_lectin 152 264 IPR001480 -
Cec05g1862 924 Gene3D Phosphorylase Kinase; domain 1 570 674 - -
Cec05g1862 924 ProSiteProfiles Bulb-type lectin domain profile. 144 260 IPR001480 -
Cec05g1862 924 ProSiteProfiles PAN/Apple domain profile. 434 517 IPR003609 -
Cec05g1862 924 Pfam D-mannose binding lectin 191 274 IPR001480 -
Cec05g1862 924 FunFam S-receptor-like kinase 5 675 879 - -
Cec05g1862 924 CDD STKc_IRAK 606 873 - -
Cec05g1862 924 Gene3D Transferase(Phosphotransferase) domain 1 675 874 - -
Cec05g1862 924 SMART serkin_6 600 870 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec05g1862 924 FunFam serine/threonine-protein kinase PBS1-like 569 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1862 Cec-Chr5:30685855 Cec07g1382 Cec-Chr7:29419312 3.00E-209 dispersed
Cec05g1926 Cec-Chr5:31318978 Cec05g1862 Cec-Chr5:30685855 4.20E-40 dispersed
Cec08g1379 Cec-Chr8:25663762 Cec05g1862 Cec-Chr5:30685855 2.90E-21 dispersed
Cec08g0901 Cec-Chr8:20821685 Cec05g1862 Cec-Chr5:30685855 4.60E-111 transposed
Cec11g0326 Cec-Chr11:3499279 Cec05g1862 Cec-Chr5:30685855 4.30E-29 wgd
Cec05g1862 Cec-Chr5:30685855 Cec08g1377 Cec-Chr8:25649734 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72021 PF00069 Pkinase 3.90E-51 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1862 - - - 0.0