Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1866 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAGATTCGCCACCCACTGCTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACAGCAGAGGATGCAGCTCGAGCGTATGATCAAGCAGCCATTTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCTAAAGACCAATCTGAAGAAGCTAGCCATGGCCATGGTTCTTCTCCAATGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAATCCATCTCCCTCATTGACATGCCTGCGGCTCGACAGTGACAACGCTCACATCGGCGTATGGCAGAAGCGTGCAGGCACTCGAGCAACCTCTAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGATACCGTCCCCGTCCCTGTCGCCTGAATCGACAAGTCAGGAAGCTGATGACCATGGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCTACTTCAAGCTAA 573 49.74 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRATSNWVMRIELGKKEIPSPSLSPESTSQEADDHGNGIDEEDRIAMQMIEELLNWNCPLPSTSS 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30743518 30744684 + CePI673135_05g018660.1 Cec05g1866 203669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1866 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cec05g1866 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 MobiDBLite consensus disorder prediction 142 167 - -
Cec05g1866 190 MobiDBLite consensus disorder prediction 59 84 - -
Cec05g1866 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 134 IPR050913 -
Cec05g1866 190 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec05g1866 190 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Cec05g1866 190 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1866 Cec-Chr5:30743518 Cec07g1388 Cec-Chr7:29477260 7.70E-51 dispersed
Cec09g1910 Cec-Chr9:35957976 Cec05g1866 Cec-Chr5:30743518 1.60E-16 transposed
Cec11g0313 Cec-Chr11:3367401 Cec05g1866 Cec-Chr5:30743518 7.40E-54 wgd
Cec05g1866 Cec-Chr5:30743518 Cec06g1284 Cec-Chr6:26016939 4.70E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29610 PF00847 AP2 3.80E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1866 - - - 0.0