Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec05g1880 | ATGTCGAAGCAGAAGTCGAAGAAGATGGGATTATTAGGGAGATCAATGTGCGGGAGAGAGCAAGAGCGAGAGATAGAGCAATTATCGAGAGACGACGGCAGCCAATACAGTCTCACCGGCGGAATCCTTCCGCCGCTTGGCGTAAATGGGCGAAATAAAGGAAGAGTCAAACTCCGTAGTCATACAATTTCGCCATTCGATTACAATTACAGACTTTGGGAAACGTTTTTGATATTTCTAGTACTGTACACCGCCTGGGTTTGTCCGTTTGAGTTCGGGTTCATTCCTTCACCACACGGAGCTCTTGCTGTGATCGATAACGTTGTAAATGGAATATTCGCCATTGATATAGTTTTGACCTTCTTCGTGGCATATTTGGACAAAACTACTTACCTGCTCGTGGATGATCGGAAGCTGATTGCTCTGCGATATGCGAAAACCTGGTTGATTTTCGACGTTGTGTCAATTATTCCGTCGGAAATGGCTCGTGCTATTCTTCCTCCTTCTCTTCAAACTTATGGCTACTTCAATATGCTCCGTCTATGGCGTCTTCGAAGAGTGAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTTATATTTGTGTGTCTATTCACGGTTCATTTTGCTGGGTGCTGCTTCTATCTAATGGCTGCAAACTATCCAGACCCAAAAAGGACATGGTTAGCCTTATCCATCGAAGATTTTCATAACGCAAGTTTGCGGGTGCGTTATGTGACTTCCATTTACTGGTCAATTGTCACAATCACAACCACTGGCTATGGCGATTTGCATCCGGTAAATGATCAAGAAATGACTTTTGGCATCTGTTACCTCTTCTTTATTCTCGGCTTGCAAGCTTACCTGATTGGAAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGGAAATTTAGGGACACAATTCAAGCTGCCTCGAATTTTGCCCATAGAAATCAACTACCTGTTCGTCTTCAAGAACAGATGCTGGCTCATCTATGTTTGAAATTCAGAACTGATTCAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCGAAAGCCATCAGATCTGGCATCGCTCACCATCTCTTCTATTCACTTGTTGATAGTGCTTATTTGTTTCATGGAGTGTCAACAGACTTGATTTTTCAACTGGTTACTGAAATGAAGGCTGAGTACTTCCCTCCCAAAGAAGATATCATCTTGGAGAATGAAGCACCAACAGACTTATATATAGTTGTCACTGGCACTGCGGATCTTATTATACAAAGAAACGGAATGGAAGAGATTGTTGGCGAAGCAAAGATGGGAGATGTCATCGGCGAGATAGGTGTGCTTTGTTATCAACCACAATTGTTTACAGTTCGAACCAGCCGTTTGAGTCAATTGCTGCGCTTGAATCGCTCCTCGTTTTTTAACTTGGTGCAAGCAAGCGTTGGGGATGGGACAATAATAATGAACAATCTCCTTAAGCACCTGAAGGAGATAAAAGACCCCGTGATGGAGGACATTCTACAAGAAACAGAACAGACATTGACCAAGGCCGGAATGGAAATGCCTCTCAATTTATGCTATGCCGCAGACAGTGGCGATGATATATTGTTGCATCAATTGCTAAAGCGGGGTTCGAATCCAAATGAAGTAGATGGCAACGTCGGGAAGACAGCACTTCATATTGCAGCAGCTAAAGGAAATGAACACTGCGTAGCTCTACTCCTAGAGTATGGGGCAGACCCGAACAGAAGAGACTTTGATGGAAACGTACCCCTGTGGCAAGCAATACAAGGGAAGCATGAGTCTATAGTCAAGCTTCTAATGGACAACGGTGCCAATATTTCTTCAGGCGACGTTGCCCAGTTTGCTTGCACCGCTGCAGAGCAAAACAGCATAGATATGCTCAAATCCATCATCCAATGTGGTGGAGACGTAACGCTGCCAAGAAGCAACGGGACAACAGCTCTTCACATGGCAGTATGTGAAGGAAACAGTGAAACAGTGAAGTTTCTTTTAGATCAGGGGGCTGACATTGATAAGGCAGATGTTCATGAATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGAATACATCATCTGTTGTCCATATTCCACAAAATCCTGAATCAAATTACCTACGGAAGTATCAGAGTGAATCAAACATGCCACCACGGTTTTCCCAAGACTCATGCACGACTCCTGTTCGAGAATCAAATTGCTCTGATATGCCTCCTAGAAGGCGAAGGAGCAATAATTATCAAAACTCACTAGTTGGGTTCATGACAACTAACAATAGAGGTGAAAGGGAAATTTTACTCGGTTTTAACAATAGCCGAAGCATGAGAACGACTTACCAGGCAAGAATTACTCTCAGTTGCCCTGAAACTGGACAGGCTTCCGGAAAGCTAATGTTTTTACCCAAATCTATCCAAGAACTACTTGAAATAGGTTCCAAAAAATTTGGGATCTCCGTAGCAAAGATTTTAACTCAAGAAGGAGCTGAAGTTGAGGATACTGACCTTATCAGAGACGGCGATCACCTCATACTTGTTGGTGATGCTGGTGCTCCCCAGTAG | 2658 | 43.79 | MSKQKSKKMGLLGRSMCGREQEREIEQLSRDDGSQYSLTGGILPPLGVNGRNKGRVKLRSHTISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFIPSPHGALAVIDNVVNGIFAIDIVLTFFVAYLDKTTYLLVDDRKLIALRYAKTWLIFDVVSIIPSEMARAILPPSLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFTVHFAGCCFYLMAANYPDPKRTWLALSIEDFHNASLRVRYVTSIYWSIVTITTTGYGDLHPVNDQEMTFGICYLFFILGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAHRNQLPVRLQEQMLAHLCLKFRTDSEGLQQQETVDSLPKAIRSGIAHHLFYSLVDSAYLFHGVSTDLIFQLVTEMKAEYFPPKEDIILENEAPTDLYIVVTGTADLIIQRNGMEEIVGEAKMGDVIGEIGVLCYQPQLFTVRTSRLSQLLRLNRSSFFNLVQASVGDGTIIMNNLLKHLKEIKDPVMEDILQETEQTLTKAGMEMPLNLCYAADSGDDILLHQLLKRGSNPNEVDGNVGKTALHIAAAKGNEHCVALLLEYGADPNRRDFDGNVPLWQAIQGKHESIVKLLMDNGANISSGDVAQFACTAAEQNSIDMLKSIIQCGGDVTLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKADVHEWTPRGLADHQGHEEIKELFSVKQAVNTSSVVHIPQNPESNYLRKYQSESNMPPRFSQDSCTTPVRESNCSDMPPRRRRSNNYQNSLVGFMTTNNRGEREILLGFNNSRSMRTTYQARITLSCPETGQASGKLMFLPKSIQELLEIGSKKFGISVAKILTQEGAEVEDTDLIRDGDHLILVGDAGAPQ | 885 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 30864507 | 30871936 | + | CePI673135_05g018800.1 | Cec05g1880 | 203683 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec05g1880 | 885 | ProSiteProfiles | KHA domain profile. | 815 | 885 | IPR021789 | - | |
| Cec05g1880 | 885 | Gene3D | - | 534 | 719 | IPR036770 | - | |
| Cec05g1880 | 885 | FunFam | Potassium channel KAT3 | 72 | 310 | - | - | |
| Cec05g1880 | 885 | Pfam | KHA, dimerisation domain of potassium ion channel | 815 | 877 | IPR021789 | - | |
| Cec05g1880 | 885 | PANTHER | POTASSIUM CHANNEL AKT1 | 25 | 876 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cec05g1880 | 885 | SUPERFAMILY | cAMP-binding domain-like | 314 | 508 | IPR018490 | - | |
| Cec05g1880 | 885 | CDD | CAP_ED | 388 | 491 | IPR000595 | - | |
| Cec05g1880 | 885 | SUPERFAMILY | Ankyrin repeat | 501 | 717 | IPR036770 | - | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat region circular profile. | 567 | 598 | - | - | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat profile. | 600 | 632 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SMART | ANK_2a | 567 | 596 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SMART | ANK_2a | 631 | 660 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SMART | ANK_2a | 533 | 562 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SMART | ANK_2a | 600 | 629 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SMART | ANK_2a | 664 | 693 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | Pfam | Ion transport protein | 70 | 314 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cec05g1880 | 885 | Pfam | Cyclic nucleotide-binding domain | 407 | 492 | IPR000595 | - | |
| Cec05g1880 | 885 | SMART | cnmp_10 | 388 | 505 | IPR000595 | - | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat region circular profile. | 664 | 695 | - | - | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat profile. | 664 | 696 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat profile. | 567 | 599 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | SUPERFAMILY | Voltage-gated potassium channels | 65 | 309 | - | - | |
| Cec05g1880 | 885 | ProSiteProfiles | Ankyrin repeat region circular profile. | 600 | 631 | - | - | |
| Cec05g1880 | 885 | Gene3D | Jelly Rolls | 356 | 528 | IPR014710 | - | |
| Cec05g1880 | 885 | FunFam | Potassium channel KAT2 | 376 | 512 | - | - | |
| Cec05g1880 | 885 | Pfam | Ankyrin repeats (3 copies) | 538 | 629 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | Pfam | Ankyrin repeats (3 copies) | 638 | 715 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | PRINTS | Ankyrin repeat signature | 680 | 694 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | PRINTS | Ankyrin repeat signature | 568 | 583 | IPR002110 | GO:0005515(InterPro) | |
| Cec05g1880 | 885 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 388 | 490 | IPR000595 | - | |
| Cec05g1880 | 885 | MobiDBLite | consensus disorder prediction | 746 | 778 | - | - | |
| Cec05g1880 | 885 | Gene3D | - | 71 | 309 | - | - | |
| Cec05g1880 | 885 | PRINTS | EAG/ELK/ERG potassium channel family signature | 117 | 126 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cec05g1880 | 885 | PRINTS | EAG/ELK/ERG potassium channel family signature | 256 | 273 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cec05g1880 | 885 | PRINTS | EAG/ELK/ERG potassium channel family signature | 300 | 309 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cec05g1880 | 885 | PRINTS | EAG/ELK/ERG potassium channel family signature | 106 | 116 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cec05g1880 | 885 | PRINTS | EAG/ELK/ERG potassium channel family signature | 83 | 90 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec05g1880 | Cec-Chr5:30864507 | Cec06g1235 | Cec-Chr6:25336382 | 4.00E-307 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec05g1880 | K21867 | - | csv:101217334 | 1463.74 |