Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1888 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAATATCATCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGATATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAGAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATCAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAGTTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCCGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 41.03 MSRENVTVQVEECSGRITRARAKELSESGGILCSSISSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGEERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAASSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQSYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30937193 30942360 + CePI673135_05g018880.1 Cec05g1888 203691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1888 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cec05g1888 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec05g1888 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cec05g1888 484 FunFam Cyclin A1 341 473 - -
Cec05g1888 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cec05g1888 484 Gene3D - 239 352 - -
Cec05g1888 484 PIRSF Cyclin_A_B_D_E 35 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cec05g1888 484 SMART cyclin_7 358 446 IPR013763 -
Cec05g1888 484 SMART cyclin_7 261 345 IPR013763 -
Cec05g1888 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cec05g1888 484 FunFam Mitotic cyclin 6 239 339 - -
Cec05g1888 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cec05g1888 484 Gene3D - 225 473 - -
Cec05g1888 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cec05g1888 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1888 Cec-Chr5:30937193 Cec09g0240 Cec-Chr9:2086511 6.40E-110 dispersed
Cec02g2373 Cec-Chr2:41000627 Cec05g1888 Cec-Chr5:30937193 1.20E-45 transposed
Cec04g0653 Cec-Chr4:25420608 Cec05g1888 Cec-Chr5:30937193 2.90E-43 transposed
Cec04g1797 Cec-Chr4:36778671 Cec05g1888 Cec-Chr5:30937193 1.10E-47 transposed
Cec09g2384 Cec-Chr9:40616623 Cec05g1888 Cec-Chr5:30937193 6.50E-35 transposed
Cec11g1912 Cec-Chr11:33326601 Cec05g1888 Cec-Chr5:30937193 5.60E-47 transposed
Cec05g1888 Cec-Chr5:30937193 Cec08g1329 Cec-Chr8:25223519 7.10E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1888 K06627 - csv:101204275 846.269