Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1888 ATGAGTAGGGAAAATGTTACTGTTCAAGTTGAAGAGTGCTCCGGCAGAATCACAAGAGCACGGGCGAAAGAGCTAAGCGAATCAGGAGGCATTCTATGCTCCTCAATATCATCTGGAGTTCAGAAACATATTCTACGAACTAACTCAAAAAGAATGGCATCTGATGATATTACGATTTGTTCAATTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAAGATTTTGATAAGAATTGCAGAAATGCTTCTAACATTCAGGGTGCCAAGCCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGCGCCTTTAAATGCTCCTGTAGAAATTCTAGGTGCAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATCACGAGAAGTCTCTTTAAGAGGAACTTTGGATGGAGAAGAGAGAACCGTGCAAACTACGAGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTATCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATTTATCGCACCTGAACAATCGGCAGCATCAAGTGATAAAGGTGTTATAGACATTGATTCAAACTCCAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTACCTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTGTCTGAAGAATATAATCTAGTTTCAGATACACTCTATCTCACTGTGAATGTCATCGATCGGTTTCTCTCTCAAAGTTATATTGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGCTTATTGCATCAAAATATGAGGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACAAAAGCAGAGGTAGTAGAAATGGAGAGTGAAGTTTTGAACTTACTGCACTTTCGGCTATCTGTTCCCACTACAAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCGGCGTCCGCCGTTTTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGTTTCTCAGCTGAAAACTGCTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATACGTCAGAAGTATAGACAACCGAAGTTCAAATGCGTAGCGACGTTAACAGCTACGAAATCGGTTCTATCCCTATTTTGA 1455 41.03 MSRENVTVQVEECSGRITRARAKELSESGGILCSSISSGVQKHILRTNSKRMASDDITICSISSNGLPNKRRAVLKDVTNISTKDFDKNCRNASNIQGAKPTRRVSAKAKANAPLNAPVEILGAEEDANTRLAEDLSKIRVVESREVSLRGTLDGEERTVQTTSHTSRECGVSDMILSVSSEESIPQPNEKFIAPEQSAASSDKGVIDIDSNSKCLQSCSIYAPDIYDRIRVTELDQRASTTYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTLYLTVNVIDRFLSQSYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKAEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNVSQLKTAVLALQDLQLNTSASSLNAIRQKYRQPKFKCVATLTATKSVLSLF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30937193 30942360 + CePI673135_05g018880.1 Cec05g1888 203691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1888 484 Pfam Cyclin, C-terminal domain 354 475 IPR004367 -
Cec05g1888 484 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec05g1888 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Cec05g1888 484 FunFam Cyclin A1 341 473 - -
Cec05g1888 484 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Cec05g1888 484 Gene3D - 239 352 - -
Cec05g1888 484 PIRSF Cyclin_A_B_D_E 35 483 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cec05g1888 484 SMART cyclin_7 358 446 IPR013763 -
Cec05g1888 484 SMART cyclin_7 261 345 IPR013763 -
Cec05g1888 484 SUPERFAMILY Cyclin-like 353 478 IPR036915 -
Cec05g1888 484 FunFam Mitotic cyclin 6 239 339 - -
Cec05g1888 484 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Cec05g1888 484 Gene3D - 225 473 - -
Cec05g1888 484 SMART Cyclin_C_2 354 477 IPR004367 -
Cec05g1888 484 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1888 K06627 - - csv:101204275 846.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1888 Cec-Chr5:30937193 Cec09g0240 Cec-Chr9:2086511 6.40E-110 dispersed
Cec02g2373 Cec-Chr2:41000627 Cec05g1888 Cec-Chr5:30937193 1.20E-45 transposed
Cec04g0653 Cec-Chr4:25420608 Cec05g1888 Cec-Chr5:30937193 2.90E-43 transposed
Cec04g1797 Cec-Chr4:36778671 Cec05g1888 Cec-Chr5:30937193 1.10E-47 transposed
Cec09g2384 Cec-Chr9:40616623 Cec05g1888 Cec-Chr5:30937193 6.50E-35 transposed
Cec11g1912 Cec-Chr11:33326601 Cec05g1888 Cec-Chr5:30937193 5.60E-47 transposed
Cec05g1888 Cec-Chr5:30937193 Cec08g1329 Cec-Chr8:25223519 7.10E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2384 . 53 340 Core Cell Cycle Gene Families AT3G48750 85.8 4.7e-148 520.8
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.6e-95 346.3
Cec11g1943 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.3e-93 338.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 7.9e-154 540.0
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT3G54180 53.5 1.4e-89 326.6
Cec04g0733 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 4.5e-123 437.6
Cec11g1943 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Cec11g1943 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Cec04g0733 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.7 2.4e-118 422.2
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G76540 53.8 1.5e-91 333.2
Cec11g1943 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.4e-160 560.8
Cec04g0733 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Cec05g2384 . 53 336 Core Cell Cycle Gene Families AT1G20930 55.5 1.9e-94 342.8
Cec02g2538 . 79 593 Core Cell Cycle Gene Families AT5G10270 75.3 8.8e-219 756.5
Cec10g1422 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.7e-209 725.7
Cec03g1707 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Cec05g0684 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 2.2e-97 353.2
Cec05g1107 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.2e-97 353.2
Cec08g0186 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 8.5e-97 351.3
Cec11g0067 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 5.5e-96 348.6
Cec02g1848 . 172 488 Core Cell Cycle Gene Families AT5G10270 52.6 2.1e-95 346.7
Cec03g0381 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.6 8.0e-95 344.7
Cec02g1707 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.7 2.6e-93 339.7
Cec02g1847 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.3 5.4e-91 332.0
Cec02g2538 . 143 592 Core Cell Cycle Gene Families AT5G64960 72.9 8.1e-179 623.6
Cec10g1422 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.2 2.5e-172 602.1
Cec02g1848 . 226 488 Core Cell Cycle Gene Families AT5G64960 53.6 7.1e-82 301.6
Cec05g1107 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Cec03g1707 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 7.8e-81 298.1
Cec11g0067 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.3e-80 297.4
Cec05g0684 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 2.3e-80 296.6
Cec08g0186 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 5.1e-80 295.4
Cec02g1847 . 182 444 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-79 294.3
Cec03g0381 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.2 3.3e-79 292.7
Cec06g1651 . 4 414 Core Cell Cycle Gene Families AT1G73690 73.7 1.4e-171 599.4
Cec06g1651 . 12 348 Core Cell Cycle Gene Families AT1G66750 77.2 5.6e-156 547.4
Cec05g2384 . 56 333 Core Cell Cycle Gene Families AT1G66750 50.4 2.8e-75 279.3
Cec06g1651 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.2 1.9e-173 605.5
Cec04g0193 . 32 484 Core Cell Cycle Gene Families AT5G63610 78.0 4.1e-202 701.0
Cec11g0246 . 1 482 Core Cell Cycle Gene Families AT4G28980 62.9 1.5e-175 612.8
Cec08g0619 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 1.7e-144 509.6
Cec09g0240 . 347 625 Core Cell Cycle Gene Families AT1G44110 54.8 5.1e-88 322.0
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 5.8e-84 308.5
Cec05g2257 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.9e-82 303.5
Cec08g1681 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 2.1e-78 290.0
Cec08g1329 . 334 595 Core Cell Cycle Gene Families AT1G44110 53.4 2.9e-75 279.6
Cec09g0240 . 346 621 Core Cell Cycle Gene Families AT1G77390 51.4 1.1e-76 284.3
Cec05g1888 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.1e-74 277.7
Cec05g2257 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.2 7.5e-73 271.6
Cec08g1329 . 334 591 Core Cell Cycle Gene Families AT1G77390 50.8 1.2e-67 254.2
Cec05g1888 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.0 5.9e-118 421.4
Cec08g1329 . 167 607 Core Cell Cycle Gene Families AT5G25380 51.7 3.1e-103 372.5
Cec09g0240 . 345 625 Core Cell Cycle Gene Families AT5G25380 63.0 1.0e-98 357.5
Cec08g0619 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 9.8e-81 297.7
Cec05g2257 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 1.4e-74 277.3
Cec02g0707 . 119 343 Core Cell Cycle Gene Families AT5G25380 51.8 8.1e-59 224.9
Cec05g1888 . 44 422 Core Cell Cycle Gene Families AT5G11300 53.6 6.5e-95 344.7
Cec08g1329 . 330 545 Core Cell Cycle Gene Families AT5G11300 70.4 6.6e-79 291.6
Cec08g0619 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 4.0e-68 255.8
Cec05g2257 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 2.1e-61 233.4
Cec08g1681 . 92 307 Core Cell Cycle Gene Families AT5G11300 51.9 6.8e-60 228.4
Cec02g0707 . 119 285 Core Cell Cycle Gene Families AT5G11300 51.8 2.2e-42 170.2
Cec09g0240 . 311 625 Core Cell Cycle Gene Families AT1G15570 64.7 2.3e-117 419.5
Cec08g0619 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.4 2.6e-81 299.7
Cec02g0707 . 119 347 Core Cell Cycle Gene Families AT1G15570 50.9 7.0e-58 221.9
Cec09g0240 . 126 625 Core Cell Cycle Gene Families AT1G80370 51.2 2.8e-118 422.5
Cec08g0619 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 3.5e-81 299.3
Cec05g2257 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Cec08g1681 . 92 370 Core Cell Cycle Gene Families AT1G80370 51.6 4.9e-75 278.9
Cec02g0707 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.5 2.7e-57 219.9
Cec08g1681 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.3 1.8e-114 409.5
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.0 1.0e-112 403.7
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Cec08g0619 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 5.6e-79 291.6
Cec09g0240 . 348 625 Core Cell Cycle Gene Families AT5G43080 51.3 2.2e-75 279.6
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.1 1.3e-123 439.9
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.2 4.8e-113 404.8
Cec05g1888 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Cec09g0240 . 348 620 Core Cell Cycle Gene Families AT1G47210 51.1 1.4e-75 280.4
Cec08g1329 . 331 597 Core Cell Cycle Gene Families AT1G47210 50.2 6.6e-70 261.5
Cec05g2257 . 124 404 Core Cell Cycle Gene Families AT1G47220 58.7 5.7e-94 341.3
Cec08g1681 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.6 1.4e-92 336.7
Cec05g2257 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.4 4.2e-117 418.3
Cec08g1681 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.1e-114 410.2
Cec02g0707 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.5 4.2e-77 285.4
Cec08g0619 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 2.7e-76 282.7
Cec09g0240 . 350 620 Core Cell Cycle Gene Families AT1G47230 51.6 1.1e-72 270.8
Cec05g1888 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Cec04g0653 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 3.5e-115 412.1
Cec04g0653 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.8 2.0e-81 299.7
Cec02g2373 . 822 1020 Core Cell Cycle Gene Families AT5G06150 63.8 4.9e-64 241.9
Cec04g1797 . 170 344 Core Cell Cycle Gene Families AT5G06150 53.1 2.5e-44 176.4
Cec04g0653 . 1 406 Core Cell Cycle Gene Families AT3G11520 57.2 2.5e-104 375.9
Cec04g1797 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.0 4.4e-61 232.3
Cec02g2373 . 730 1127 Core Cell Cycle Gene Families AT2G26760 52.5 3.7e-108 388.7
Cec04g1797 . 8 440 Core Cell Cycle Gene Families AT2G17620 59.5 8.8e-127 450.7
Cec11g1912 . 181 580 Core Cell Cycle Gene Families AT2G17620 52.2 1.9e-105 379.8
Cec04g1797 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.2 3.0e-102 369.0
Cec11g1912 . 174 537 Core Cell Cycle Gene Families AT4G35620 53.4 7.6e-90 327.8
Cec02g2373 . 853 1079 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Cec11g1912 . 145 580 Core Cell Cycle Gene Families AT1G20610 63.3 2.3e-143 505.8
Cec04g1797 . 1 440 Core Cell Cycle Gene Families AT1G20610 56.6 1.5e-121 433.3
Cec11g1912 . 148 477 Core Cell Cycle Gene Families AT1G76310 63.8 8.3e-104 374.0
Cec04g1797 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.2 5.8e-81 298.1
Cec02g2373 . 849 1016 Core Cell Cycle Gene Families AT1G76310 52.4 5.8e-41 165.2
Cec09g2170 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Cec05g2734 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 7.5e-105 377.5
Cec04g1542 . 41 335 Core Cell Cycle Gene Families AT2G22490 55.3 1.3e-83 307.0
Cec05g1197 . 14 335 Core Cell Cycle Gene Families AT4G34160 50.8 2.1e-79 293.1
Cec02g0664 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 4.3e-61 232.3
Cec05g2245 . 388 635 Core Cell Cycle Gene Families AT5G67260 51.4 9.0e-65 244.6
Cec04g1542 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.8e-69 259.6
Cec08g1180 . 131 328 Core Cell Cycle Gene Families AT5G65420 56.5 4.1e-61 231.9
Cec04g1542 . 54 233 Core Cell Cycle Gene Families AT5G10440 58.6 2.1e-55 212.6
Cec08g1180 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 4.5e-50 194.9
Cec04g1340 . 149 417 Core Cell Cycle Gene Families AT5G27620 63.6 6.4e-92 334.3
Cec01g1390 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.2e-44 172.9
Cec02g2278 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Cec01g1390 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.3e-39 158.7
Cec02g2278 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Cec05g2932 . 300 1319 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1417.5
Cec09g0589 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 5.4e-160 561.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008500 1 1 3 1 1 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 2 1 1 35