Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1944 ATGGATAGGGATTGTAATACCGGGCTTCTCCTTGCCCTGGGGCGGGTTTCTGGTGATGATTCCCTGGGTTCCCTCCTACCACCCGAAGTAGCCGATGTGAAGAAGAAGCTCCAGGTTTTGAAGTTTGATGATATTTTGCCTTCTTTGACGCTTGGATTGTCGACTGTCGTAGAGAAGAGCGCCGCCACCGACGAATTAATTCAGCAGGGGTGTTCGGGTAGTCCGGCGTCGTCATTTTCAAACTCATCGGGGTTTAAAAGAGAGCGAGACGGTGGCGGTGAAGAGAAGGAGGCGGAGGTGTATATGAAAGTGGGTGAGGAAGATGAAGATGGAAGTCCCAGGAAGAAACTTAGATTAACTAAACAACAATCCGCCATTTTAGAGGATAACTTCAAAGAGCACTCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCCAAACAGTTAAAGCTAAGGCCAAGACAAGTGGAAGTATGGTTTCAAAACAGAAGAGCCAGAACCAAGCTGAAGCAAACAGAAATGGACTGTGAATTACTGAAGAAATGTTGTGAAAAGCTGAAAGAAGAAAACACAAGGCTTCAAAAGGAACTTCAAGAGCTTAAATCACTCAAATTAACGGCTCCACCGTTCTGCATGCAGCTACAAGCCGCCACTCTCACCGTTTGCCCTTCATGTGAGACCTCAATTTGCAGCGGCGGCGGAGGAGGTGGTGGTAATGCATCTCCGCCCAATACTTTCTCAATTGGATCAAAGCCTCACTTTCTCAAATTTCCCTTTAAACACCCATCGGCGGCTTGTTAG 801 46.94 MDRDCNTGLLLALGRVSGDDSLGSLLPPEVADVKKKLQVLKFDDILPSLTLGLSTVVEKSAATDELIQQGCSGSPASSFSNSSGFKRERDGGGEEKEAEVYMKVGEEDEDGSPRKKLRLTKQQSAILEDNFKEHSSLSPKQKQDLAKQLKLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCETSICSGGGGGGGNASPPNTFSIGSKPHFLKFPFKHPSAAC 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31498779 31500187 + CePI673135_05g019440.1 Cec05g1944 203747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1944 266 MobiDBLite consensus disorder prediction 68 97 - -
Cec05g1944 266 SMART HOX_1 112 174 IPR001356 GO:0003677(InterPro)
Cec05g1944 266 Pfam Homeobox associated leucine zipper 170 203 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1944 266 MobiDBLite consensus disorder prediction 68 85 - -
Cec05g1944 266 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 76 227 IPR050762 -
Cec05g1944 266 SMART halz 170 213 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec05g1944 266 Gene3D - 105 175 - -
Cec05g1944 266 Coils Coil 169 206 - -
Cec05g1944 266 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677(InterPro)
Cec05g1944 266 SUPERFAMILY Homeodomain-like 111 178 IPR009057 -
Cec05g1944 266 FunFam Homeobox-leucine zipper protein 18 99 175 - -
Cec05g1944 266 CDD homeodomain 113 171 IPR001356 GO:0003677(InterPro)
Cec05g1944 266 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec05g1944 266 Pfam Homeodomain 114 168 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1944 Cec-Chr5:31498779 Cec10g0842 Cec-Chr10:16896854 3.70E-51 dispersed
Cec05g1944 Cec-Chr5:31498779 Cec09g0378 Cec-Chr9:3241315 2.00E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29615 PF00046 Homeodomain 3.90E-17 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1944 K09338 - csv:101212868 348.206