Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1945 ATGGAGGAATATAATAATGAAGTAAACGAGAACTCAAATGGGAGAGGGAATTTCTTGTATGGATCAGGGAATTCTTCATCAGGTAATTTTGGAAGATCAACGGCTGAGATGGGTGTTGTTAATACCTTTCATCTTCAACATGGAACCGACTGTTTTCAACCGCACCACCCGATTGTCAAAACTGAAGCCACTACTTCACACCATCAGCTTCTCAAATTTCATTACCCTTTAATCAGACCACCACCACCAGCTCACCCGCCGCCGACATGTCGTCCTGAACAAAACGGTGTGGTTGATGTTGAAGCCATTAAGGCTAAAATCCTTGCTCATCCTCAATACTCCAGCCTCCTTGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGCCGCAAGTGGTGGAGCGGCTGGTGGCGGCCCGGCAAGAATTTGAAGCACGGCAGCGTTCTTCCATGGTTTCTGGAGATACCACAAAGGATCCAGAGCTTGATCAATTCATGGAAGCTTATTACGACATGTTGGTGAAATATCGGGAGGAACTTTCAAGGCCCATTCAAGAAGCCATGGATTTCATGAGAAGGATTGAATCTCAGCTCACTTCTCTCTGTAATGGCCCAGTTCGGATCTTCAATTCCGATGAGAAGTGTGAAGGTATGGGATCGTCTGAGGAGGAACAAGACAATAGCGGCGGAGAAACCGAACTCCCGGAGATAGATCCTCGTGCTGAAGATAGAGAATTGAAGAATCACCTACTGAGGAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTCCCAAAAGATGCAAGGCAGAAACTGCTTAATTGGTGGGAGTTACATTACAAATGGCCATACCCCTCAGAGACAGAGAAGGTGGCGTTAGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAACTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGGCTTCATCCTCCCAATGCCGCCCTATATATTGACGGTCACTACATGTCCGATGGCCATTATCGGCTCGGACCATGA 1092 46.15 MEEYNNEVNENSNGRGNFLYGSGNSSSGNFGRSTAEMGVVNTFHLQHGTDCFQPHHPIVKTEATTSHHQLLKFHYPLIRPPPPAHPPPTCRPEQNGVVDVEAIKAKILAHPQYSSLLEAYMECQKVGAPPQVVERLVAARQEFEARQRSSMVSGDTTKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIESQLTSLCNGPVRIFNSDEKCEGMGSSEEEQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMSDGHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31502954 31506852 - CePI673135_05g019450.1 Cec05g1945 203748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1945 363 SUPERFAMILY Homeodomain-like 266 341 IPR009057 -
Cec05g1945 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 335 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec05g1945 363 Gene3D - 270 332 - -
Cec05g1945 363 SMART KNOX1_2 101 145 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1945 363 CDD homeodomain 277 329 IPR001356 GO:0003677(InterPro)
Cec05g1945 363 Pfam ELK domain 245 266 IPR005539 GO:0003677(InterPro)
Cec05g1945 363 FunFam Homeobox protein knotted-1-like 2 270 332 - -
Cec05g1945 363 ProSiteProfiles ELK domain profile. 245 265 IPR005539 GO:0003677(InterPro)
Cec05g1945 363 SMART KNOX2_2 152 203 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1945 363 MobiDBLite consensus disorder prediction 1 20 - -
Cec05g1945 363 Pfam Homeobox KN domain 285 324 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec05g1945 363 SMART ELK_2 161 181 IPR005539 GO:0003677(InterPro)
Cec05g1945 363 SMART ELK_2 245 266 IPR005539 GO:0003677(InterPro)
Cec05g1945 363 SMART HOX_1 267 332 IPR001356 GO:0003677(InterPro)
Cec05g1945 363 Pfam KNOX1 domain 102 144 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1945 363 ProSiteProfiles 'Homeobox' domain profile. 265 328 IPR001356 GO:0003677(InterPro)
Cec05g1945 363 MobiDBLite consensus disorder prediction 212 241 - -
Cec05g1945 363 Pfam KNOX2 domain 157 202 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cec05g1945 363 ProSitePatterns 'Homeobox' domain signature. 303 326 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0230 Cec-Chr2:2194432 Cec05g1945 Cec-Chr5:31502954 7.50E-73 dispersed
Cec04g1874 Cec-Chr4:37321715 Cec05g1945 Cec-Chr5:31502954 8.00E-78 dispersed
Cec05g1832 Cec-Chr5:30339214 Cec05g1945 Cec-Chr5:31502954 4.10E-29 dispersed
Cec05g1945 Cec-Chr5:31502954 Cec05g2778 Cec-Chr5:38185860 1.20E-71 dispersed
Cec05g1945 Cec-Chr5:31502954 Cec08g1742 Cec-Chr8:28552386 4.20E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29616 PF03791 KNOX2 3.20E-25 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1945 - - - 0.0