Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1948 ATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCTTGGGACCCACTTGAAGACCACCATCTGACCGGAATTTCCTCGCCGGTCTTCATCGCCGGTGGGGTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCATTACCTTCCCTCTGCGGCGGATTCCGACGATTTGGACGCGGTGGCGGAAGCGGTGGATGGTTTTTCCTGTGACCACTTTCGGATGTTCGAGTTCAAAATCCGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCAACGCCGAGATCCGAGGAAGCATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGAAAAGGGAATTGCAAGAAAGGAGATTCTTGCGATCTCGCTCACGGGATTTTTGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCATGTAAGGATGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCTCACACGCCGGAACAGCTTCGGGTTGTGCCGCAGCAGAGCCCGAGAACGCCTGTTTCGGCCGATTCCGTTGATGGTTCTTCACGAATTGCACACGCACTCGATTCCTATTTTGCTAAAGGGTCATTTGTGACCTCACCCACTTCAATTCTATCAACGCCGCCTGTCTCTCCTCCGTCCGATTCACCACCCCTGTCACCGAATTGTCCGTTTAATTCGATGAATGGACTGGTTTCATGTATGCGTAATCTTCAAATTGGGAAATTGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGCACAATCCGCTCTCTCCCTCCGGCTCTGGTTTCTTTAACTTACCGTCAACTCCGACCATTGGAAATTACGAATTATGGGGGAAGAATTACGAGGAAGAACCGGTAATGGAGAGAGTGGAATCTGGGAGAGACCTTAGAGCCAAAATGTATGCGAAACTCAGCAAAGACAACTCTGTTAAGGAAGTGGATTCGACATTGACACCCGATATCGGATGGGTGTCGGAGCTATTAATGTGA 1050 50.95 MMIGEQSRFNHTIQVPPWDPLEDHHLTGISSPVFIAGGVDSFIDSFSAIHHYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKAQRRDPRKHHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVVPQQSPRTPVSADSVDGSSRIAHALDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQIGKLKATPHWGRIQLGHNPLSPSGSGFFNLPSTPTIGNYELWGKNYEEEPVMERVESGRDLRAKMYAKLSKDNSVKEVDSTLTPDIGWVSELLM 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31562905 31563954 + CePI673135_05g019480.1 Cec05g1948 203751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1948 349 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872(InterPro)
Cec05g1948 349 PANTHER UNKEMPT FAMILY MEMBER 42 348 IPR045234 -
Cec05g1948 349 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
Cec05g1948 349 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
Cec05g1948 349 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Cec05g1948 349 Gene3D - 110 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1948 Cec-Chr5:31562905 Cec11g0201 Cec-Chr11:2165280 7.20E-87 dispersed
Cec07g0293 Cec-Chr7:2865718 Cec05g1948 Cec-Chr5:31562905 1.70E-57 transposed
Cec07g1815 Cec-Chr7:33863386 Cec05g1948 Cec-Chr5:31562905 3.80E-46 transposed
Cec03g1649 Cec-Chr3:34662962 Cec05g1948 Cec-Chr5:31562905 3.70E-92 wgd
Cec05g1948 Cec-Chr5:31562905 Cec08g1743 Cec-Chr8:28576288 2.20E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29617 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1948 - - - 0.0