Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1954 ATGGGAATCTGTATATCCTCTGCATCTTCTCAGATTCGCCATGAAACTAACAAAGTTGGGAGTGTTTTAGAAGAAGATTATTGTAAAAAGTCTTATTGTGTGTGTGGGATTCCGAAACTGGAATCCATTTGTTCCAAGCAAGGGAGGAAAGGAGTCAACCAAGATGCTGCCTTTTCCTATCAAGAGTATGGAGAAGCAGAGGAGAGTTGTTTGTTTGGAGTTTTTGATGGGCATGGACAAAATGGTCATATTGTGAGCAACATAGTGAAGAATAGATTACCTTCACTGTTGCTTGGGCAGATAACTGGGGAGACAAAGAGTTTTGAATTGTGGAAACAAGCTTTTGAAACTTCCTTCAAGGCCATGGATAAGGAAATCAAAGTTGAAGAGAATTTGGATTGCTCCTATAGCGGATCCACCGCAGTTGTGGTGGTCAAGCAGGGAGATTATTTGGTAATTGGGAATTTGGGGGATTCGAGGGCGGTGATGGGGAGGATCACGGATGATGGAGGAATCAAAGCCATTCAATTAACCACTGATTTGAAGCCTGGATTACCGAGTGAGGGTGATCGAATAAGGAGGTGCAAAGGGAGGGTGTTGGCGCTGAAAGAAGAGGCGCATATACCCAGAGTGTGGCTCCCCAATGAAGACGCCCCGGGGCTGGCTATGTCCAGAGCTTTTGGAGATTTTGCTCTTAAACATTATGGCATTATTGCTCTCCCCCTTGTCTCCTTCCGCCCTCTTACTTCTCACGATCGTTTTATTATTCTCGCCACTGATGGGATATGGGACGTGCTGAGCAACAATGAAGTAGCGTCAATCGTGTGGGCGGCGGAGAGCGAAGAAGCGGCGGCGAAAGCGGTGGTGGAGGCGGCGGCCGAGGCTTGGAAACGCTACCCTTCTTCAAAACACGACGACTGCACCGTCGTTTGCCATTTTTTACAAAACCAAAACTGA 957 46.81 MGICISSASSQIRHETNKVGSVLEEDYCKKSYCVCGIPKLESICSKQGRKGVNQDAAFSYQEYGEAEESCLFGVFDGHGQNGHIVSNIVKNRLPSLLLGQITGETKSFELWKQAFETSFKAMDKEIKVEENLDCSYSGSTAVVVVKQGDYLVIGNLGDSRAVMGRITDDGGIKAIQLTTDLKPGLPSEGDRIRRCKGRVLALKEEAHIPRVWLPNEDAPGLAMSRAFGDFALKHYGIIALPLVSFRPLTSHDRFIILATDGIWDVLSNNEVASIVWAAESEEAAAKAVVEAAAEAWKRYPSSKHDDCTVVCHFLQNQN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31625478 31627442 - CePI673135_05g019540.1 Cec05g1954 203757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1954 318 PANTHER PROTEIN PHOSPHATASE 42 312 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec05g1954 318 Gene3D - 41 317 IPR036457 -
Cec05g1954 318 Pfam Protein phosphatase 2C 44 293 IPR001932 -
Cec05g1954 318 SUPERFAMILY PP2C-like 42 316 IPR036457 -
Cec05g1954 318 CDD PP2Cc 42 311 IPR001932 -
Cec05g1954 318 SMART PP2C_4 24 312 IPR001932 -
Cec05g1954 318 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Cec05g1954 318 ProSiteProfiles PPM-type phosphatase domain profile. 40 314 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1954 Cec-Chr5:31625478 Cec10g0367 Cec-Chr10:4408085 2.60E-75 dispersed
Cec05g1954 Cec-Chr5:31625478 Cec02g1820 Cec-Chr2:36009078 5.20E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1954 - - - 0.0