Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec05g1973 ATGATGATGATGATGATGAAGGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCTGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCTTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCTGGTCCGTGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATGAATAGTAATAATAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAACGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCTGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA 1251 42.93 MMMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPLPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPCPGQLFASCPAWEMNSNNNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31759727 31761613 - CePI673135_05g019730.1 Cec05g1973 203776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec05g1973 416 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 357 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec05g1973 416 MobiDBLite consensus disorder prediction 48 70 - -
Cec05g1973 416 FunFam protein indeterminate-domain 12-like 74 142 - -
Cec05g1973 416 MobiDBLite consensus disorder prediction 388 416 - -
Cec05g1973 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Cec05g1973 416 FunFam protein indeterminate-domain 5, chloroplastic-like 149 228 - -
Cec05g1973 416 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 132 166 - -
Cec05g1973 416 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 170 194 - -
Cec05g1973 416 SMART c2h2final6 171 191 IPR013087 -
Cec05g1973 416 SMART c2h2final6 95 117 IPR013087 -
Cec05g1973 416 SUPERFAMILY beta-beta-alpha zinc fingers 94 191 IPR036236 -
Cec05g1973 416 MobiDBLite consensus disorder prediction 30 47 - -
Cec05g1973 416 MobiDBLite consensus disorder prediction 30 79 - -
Cec05g1973 416 Gene3D Classic Zinc Finger 91 118 - -
Cec05g1973 416 Gene3D Classic Zinc Finger 164 233 - -
Cec05g1973 416 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 197 236 - -
Cec05g1973 416 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1973 Cec-Chr5:31759727 Cec09g0710 Cec-Chr9:6352375 1.90E-86 dispersed
Cec02g0249 Cec-Chr2:2348681 Cec05g1973 Cec-Chr5:31759727 5.70E-81 transposed
Cec05g1973 Cec-Chr5:31759727 Cec09g0068 Cec-Chr9:572197 2.70E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29619 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec05g1973 K25870 - csv:101215280 617.076