Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec05g1973 | ATGATGATGATGATGATGAAGGGAAATTTAATGGTGGATGAGAATTTGTCAGTTTTGACTTGTGCTTCTGGAGAAATAACAACAAGAAATGAAATTACCCCTACTGGCCCTATCTATTCTCATCAATCCTCTGCTTCCACAAATCAACCGCTACCACCACCGCCACTACCACTACCACTACCCCTGCCACCGTCGAAGAAGAAGCGAAATCTTCCCGGCAACCCAGACCCAGAAGCGGAAGTGATTGCCTTATCACCAAAATCACTTCTAGCAACGAATAGATTCATATGTGAGATTTGTAAGAAGGGGTTTCAAAGAGATCAGAATCTACAGCTCCACAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAAAGAGGCAACAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACATGCGTGCATCATCACCCGTCGAGAGCTCTCGGTGATCTAACCGGGATCAAGAAGCACTTCTGTAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAATGTTCAAAGAAATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAGATGTGACTGCGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACCCACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATTTTAATAATAACAATAATAACCCAACTCCAAAAACATCCCTTTTCCCATCTATTTCCCCTCATAATTTTCCTCTTAAAATCGAACATCAAGACCCTTTTTTTCCTTCTTTAAATCCTCAAAACCCTAACAACCCTACTTCTATCGGGTTCGGTTTACCTGGTCCGTGTCCGGGTCAACTTTTTGCTTCTTGTCCTGCATGGGAAATGAATAGTAATAATAATAATAATAATAATAATAATAATTCATGTCCAGCTGAAATTGCTCCATTTTTACATCACGTGATGGGTTTTGAAGAGGCGTCCTTTGAAGAAGCTCTCAACGGGATATTGATGAATAATAATAATAGAGCTCATAAAGACGGTGGCAAAGGTGGCGCCGCCGCAGCTGGAGACATAACGAGGGATTTTCTTGGGCTGAGACCGGTGGCGGGTACACAGCCGGATCATCCTATGTTTCAGAATCATGAGATGATAAACAACGACATGTCGAATTTGGATTCTTCTTCTTCGACAACATTTGGATTGCACCAGAACCAGAACCAGAACACGACATGTTGGCGTTCATAA | 1251 | 42.93 | MMMMMMKGNLMVDENLSVLTCASGEITTRNEITPTGPIYSHQSSASTNQPLPPPPLPLPLPLPPSKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNFNNNNNNPTPKTSLFPSISPHNFPLKIEHQDPFFPSLNPQNPNNPTSIGFGLPGPCPGQLFASCPAWEMNSNNNNNNNNNNSCPAEIAPFLHHVMGFEEASFEEALNGILMNNNNRAHKDGGKGGAAAAGDITRDFLGLRPVAGTQPDHPMFQNHEMINNDMSNLDSSSSTTFGLHQNQNQNTTCWRS | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31759727 | 31761613 | - | CePI673135_05g019730.1 | Cec05g1973 | 203776 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec05g1973 | 416 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 47 | 357 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cec05g1973 | 416 | MobiDBLite | consensus disorder prediction | 48 | 70 | - | - | |
Cec05g1973 | 416 | FunFam | protein indeterminate-domain 12-like | 74 | 142 | - | - | |
Cec05g1973 | 416 | MobiDBLite | consensus disorder prediction | 388 | 416 | - | - | |
Cec05g1973 | 416 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 95 | 117 | IPR013087 | - | |
Cec05g1973 | 416 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 149 | 228 | - | - | |
Cec05g1973 | 416 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 132 | 166 | - | - | |
Cec05g1973 | 416 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 170 | 194 | - | - | |
Cec05g1973 | 416 | SMART | c2h2final6 | 171 | 191 | IPR013087 | - | |
Cec05g1973 | 416 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Cec05g1973 | 416 | SUPERFAMILY | beta-beta-alpha zinc fingers | 94 | 191 | IPR036236 | - | |
Cec05g1973 | 416 | MobiDBLite | consensus disorder prediction | 30 | 47 | - | - | |
Cec05g1973 | 416 | MobiDBLite | consensus disorder prediction | 30 | 79 | - | - | |
Cec05g1973 | 416 | Gene3D | Classic Zinc Finger | 91 | 118 | - | - | |
Cec05g1973 | 416 | Gene3D | Classic Zinc Finger | 164 | 233 | - | - | |
Cec05g1973 | 416 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 197 | 236 | - | - | |
Cec05g1973 | 416 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 97 | 117 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec05g1973 | Cec-Chr5:31759727 | Cec09g0710 | Cec-Chr9:6352375 | 1.90E-86 | dispersed | |
Cec02g0249 | Cec-Chr2:2348681 | Cec05g1973 | Cec-Chr5:31759727 | 5.70E-81 | transposed | |
Cec05g1973 | Cec-Chr5:31759727 | Cec09g0068 | Cec-Chr9:572197 | 2.70E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29619 | None | None | None | None | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec05g1973 | K25870 | - | csv:101215280 | 617.076 |